| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | 34 = | 384 (0.420) | 78 (0.090) | 17/146 | NT | 14.2% | intergenic (–/‑198) | –/repA | –/replication protein A |
| ? | CP000731 | 65 = | 593 (0.710) | intergenic (–/‑167) | –/repA | –/replication protein A | |||||
Only 100 of 345 total aligned reads displayed.
TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTNTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000731/130‑34‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggtttGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > CP000731/65‑154 TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 2:1405568/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 2:2521821/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 1:3333828/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 2:2683306/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 1:523527/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 2:3655681/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 1:1831983/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 2:3167092/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGATTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 1:3131198/1‑91TTATTCATTATATAATACAAGTACCGAAAATTATATAAATAAACAGTTTCTACACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 2:2315415/1‑91 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG < 2:811718/91‑1 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG < 2:2498705/91‑1 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG > 1:816208/1‑91 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG > 2:1066590/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTACACGTTTTATTACCAAACCCCGACTATTACCAGTAGTGGGG > 1:1622382/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAATCGTTTTATTACCAAACCCCGACTATTACCTGTAGTTGGG < 2:167156/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 1:441872/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 1:1486315/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 1:1142977/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 1:203698/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 1:628471/1‑91 ATTCATTATATAATACAAGTATCGAAAATGATATAAATAAACAGTTTCGAAACGTTGTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 2:689553/91‑1 TTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTTTAAACGTTTTATTACCAAACCCCGACTATTATCAGTAGTTGGGG > 2:3557558/1‑91 TTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGG < 1:3311220/91‑1 TTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGG < 1:2277080/91‑1 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGa > 1:1054140/1‑90 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT < 2:2954146/91‑1 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT > 1:1748212/1‑91 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT < 1:356847/91‑1 CATTCTATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGAGTT > 1:3116656/1‑91 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT < 2:1407662/91‑1 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT < 1:1007725/91‑1 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT > 2:89270/1‑91 TTACCAAACCCCGACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTAT > 2:2052980/1‑91 TACCAAACCCCGACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATA > 1:2017413/1‑91 CGACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAA > 2:1071785/1‑91 CGACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAA > 2:606250/1‑91 CGACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACAGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAA > 1:3137209/1‑91 GACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAAT > 2:325577/1‑91 GACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAAT > 2:2996235/1‑91 GACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAAT > 2:3706014/1‑91 GACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAAT > 2:717438/1‑91 GACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAAT > 1:2825404/1‑91 ACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATA > 1:3250512/1‑91 ACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATA > 1:2467093/1‑91 ACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATA > 1:926360/1‑91 ACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATA > 1:3698101/1‑91 TATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATC > 1:2864361/1‑91 TATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATC > 1:689786/1‑91 TATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATC > 1:1388712/1‑91 TATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATC > 1:2672713/1‑91 TATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATC > 1:3204475/1‑91 TATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATC > 2:1119516/1‑91 ATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCT > 2:2752851/1‑91 ATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCT > 1:1509980/1‑91 ATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCT > 2:2187907/1‑91 ATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCT > 1:2120447/1‑91 ATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCT > 2:456697/1‑91 TTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTT > 1:1884281/1‑91 TTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTT > 1:399459/1‑91 TTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCA < 2:2902950/91‑1 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTCGTGCAAGCACC > 1:3584907/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCCCC > 2:3611814/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:2176724/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:1180810/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:2398432/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC < 2:285604/91‑1 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:2767756/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:1558723/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:3380831/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:1360430/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:3801730/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:3855844/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:2960117/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:47385/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC < 1:2729336/91‑1 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:1328006/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:1799158/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTCAGTGCAAGCACC < 1:3051106/91‑1 GGGGTTTGGTAATAAAACGTTTAGAAACCGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:1560769/1‑91 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT < 2:2475841/91‑1 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT < 1:2633163/91‑1 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT > 1:3526800/1‑91 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT > 2:3380663/1‑91 GGGTTTGGTAATAAAACGTCTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACgt > 1:3465319/1‑89 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA > 2:199134/1‑91 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA > 2:2600207/1‑91 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA < 1:2536577/91‑1 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA < 1:747497/91‑1 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA < 1:2997447/91‑1 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTGCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA < 2:3541191/91‑1 GTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAA > 1:1938337/1‑91 GTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAA < 1:2216331/91‑1 TTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAA < 2:573214/91‑1 TTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAAT < 1:784799/91‑1 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 2:3397650/1‑91 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 1:1439797/1‑91 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 2:3855582/1‑91 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 1:980361/1‑91 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC < 1:1242285/91‑1 TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTNTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000731/130‑34‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggtttGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > CP000731/65‑154 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |