New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 34 =384 (0.420)78 (0.090) 17/146 NT 14.2% intergenic (–/‑198) –/repA –/replication protein A
?CP000731 65 = 593 (0.710)intergenic (–/‑167) –/repA –/replication protein A

Only 100 of 1396 total aligned reads displayed.

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCA  >  CP000731/1‑155
                                                                                          |                                                                                          
agctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTg                                                                                            <  1:1391934‑M1/65‑1 (MQ=255)
 gctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTgg                                                                                           <  2:3892908‑M1/66‑1 (MQ=255)
 gctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTgg                                                                                           >  1:1462882‑M1/26‑91 (MQ=255)
    atattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaa                                                                                        >  2:1980363‑M1/23‑91 (MQ=255)
    atattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaa                                                                                        >  1:1867787‑M1/23‑91 (MQ=255)
      attttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaata                                                                                      >  1:393219‑M1/21‑91 (MQ=255)
       ttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaataa                                                                                     >  2:757580‑M1/20‑91 (MQ=255)
       ttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaataa                                                                                     >  2:1440332‑M1/20‑91 (MQ=255)
         ttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATaaaa                                                                                   <  1:1076729‑M1/74‑1 (MQ=255)
          tcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAAc                                                                                  <  1:416409‑M1/75‑1 (MQ=255)
           cccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACg                                                                                 <  1:3287737‑M1/76‑1 (MQ=255)
           cccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACg                                                                                 >  2:3958386‑M1/16‑91 (MQ=255)
             cttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGtt                                                                               <  1:1625195‑M1/78‑1 (MQ=255)
             cttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTAGTAATAAAacgct                                                                               <  2:2407260‑M1/78‑3 (MQ=255)
               tttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTa                                                                             <  2:2831874‑M1/80‑1 (MQ=255)
                ttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTtag                                                                            >  2:3795792‑M1/11‑90 (MQ=255)
                 tataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGa                                                                           <  1:529450‑M1/82‑1 (MQ=255)
                  ataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGaa                                                                          <  1:3489910‑M1/83‑1 (MQ=255)
                  ataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGaa                                                                          <  2:2773933‑M1/83‑1 (MQ=255)
                   taagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGaaa                                                                         >  2:2895521‑M1/8‑91 (MQ=255)
                    aagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAAc                                                                        >  2:1378290‑M1/7‑91 (MQ=255)
                     agtttATTTAAAGTGCTATAATAAACTTAATATAACAAACACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACt                                                                       <  2:2974407‑M1/86‑1 (MQ=255)
                     agtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACt                                                                       <  2:3490960‑M1/86‑1 (MQ=255)
                     agtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACt                                                                       <  2:3125085‑M1/86‑1 (MQ=255)
                     agtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACt                                                                       >  2:1791800‑M1/6‑91 (MQ=255)
                      gtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTg                                                                      <  2:3222883‑M1/87‑1 (MQ=255)
                       tttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGt                                                                     <  1:2813031‑M1/88‑1 (MQ=255)
                        ttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtt                                                                    >  1:2690057‑M1/3‑91 (MQ=255)
                         tATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGttt                                                                   >  1:2116097‑M1/2‑91 (MQ=255)
                           tttAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttat                                                                 >  1:1238955/1‑91 (MQ=255)
                            ttAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttatt                                                                <  1:3089865/91‑1 (MQ=255)
                             tAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattt                                                               >  1:696896/1‑91 (MQ=255)
                             tAAAGTGCTATAATAAACCTAATATCACAAAAACCCCAACTCCTGGTACTAGTTGGGGTTTGGTAATAAACCGTTTCGATACTGtctattt                                                               >  2:36654/1‑91 (MQ=255)
                              aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                              >  1:795168/1‑91 (MQ=255)
                               aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                             <  2:1113875/91‑1 (MQ=255)
                               aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                             >  1:3613917/1‑91 (MQ=255)
                               aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                             >  1:3846209/1‑91 (MQ=255)
                                aGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtata                                                            >  1:3764846/1‑91 (MQ=255)
                                 gTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatat                                                           <  2:2050575/91‑1 (MQ=255)
                                   gCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATaa                                                         >  1:1913238/1‑91 (MQ=255)
                                    cTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAt                                                        >  1:1669459/1‑91 (MQ=255)
                                    cTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAt                                                        >  1:479288/1‑91 (MQ=255)
                                      ataataAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAttt                                                      >  1:2241068/1‑91 (MQ=255)
                                      ataataAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAttt                                                      >  1:930919/1‑91 (MQ=255)
                                      ataataAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAttt                                                      <  1:744510/91‑1 (MQ=255)
                                       tttctaaacgttttattaccaaaccccgactattaccagtagttggggtttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAtttt                                                     >  1:1739820‑M2/52‑91 (MQ=255)
                                       taataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAtttt                                                     <  1:1131851/91‑1 (MQ=255)
                                       taataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAtttt                                                     >  2:2580202/1‑91 (MQ=255)
                                         ataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCg                                                   <  2:2126137/91‑1 (MQ=255)
                                           aaaCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGAt                                                 <  2:1695627/91‑1 (MQ=255)
                                           aaaCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGAt                                                 <  2:2749283/91‑1 (MQ=255)
                                            aaCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAGTTTTCGATa                                                <  1:1978953/91‑1 (MQ=255)
                                             aCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGCTTATTTATATAATTTTCGATAc                                               >  2:2663723/1‑91 (MQ=255)
                                              cTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTACTAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGAtctt                                              >  2:46705/1‑88 (MQ=255)
                                                tAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTg                                            >  1:592783/1‑91 (MQ=255)
                                                 aaTATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGt                                           >  2:128214/1‑91 (MQ=255)
                                                    ataACAAAAACCCCAACTACTGGGAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtatt                                        <  1:244956/91‑1 (MQ=255)
                                                     taACAAAAACCCCAACTACTGGTCATAGTCGGGCTTTAGTAATAAATCGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtatta                                       >  1:3155090/1‑91 (MQ=255)
                                                      aaCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtattat                                      >  2:2447383/1‑91 (MQ=255)
                                                      aaCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtattat                                      <  2:930663/91‑1 (MQ=255)
                                                           AAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAAt                                 >  1:321223‑M1/1‑91 (MQ=255)
                                                           AAACCCCAACTACTGATAATAGTCGGGGTTTGGTAATAAAACGTTTATAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAAt                                 >  2:3061270‑M1/1‑91 (MQ=255)
                                                            AACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATg                                <  1:1007725‑M1/91‑1 (MQ=255)
                                                             ACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGa                               <  2:1626441‑M1/91‑1 (MQ=255)
                                                              CCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaa                              <  1:3543945‑M1/91‑1 (MQ=255)
                                                               CCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaat                             <  1:2022489‑M1/91‑1 (MQ=255)
                                                                ccgactattaccagtagttggggtttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaata                            >  1:2634867‑M2/27‑91 (MQ=255)
                                                                CCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaata                            <  1:1503339‑M1/91‑1 (MQ=255)
                                                                 CAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataa                           >  1:991519‑M1/1‑91 (MQ=255)
                                                                 CAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataa                           >  2:864744‑M1/1‑91 (MQ=255)
                                                                 CAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTCAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataa                           >  2:1879157‑M1/1‑91 (MQ=255)
                                                                 CAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTGTAGAAACTGTTTATTTATATAATTTTCGGTACTTGTATTATATAATGaataa                           >  2:2315415‑M1/1‑91 (MQ=255)
                                                                 CAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTCTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataa                           <  2:3448633‑M1/91‑1 (MQ=255)
                                                                  aaCTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataat                          >  1:3355241/1‑91 (MQ=255)
                                                                  aaCTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataat                          >  1:8475/1‑91 (MQ=255)
                                                                  aaCTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTCTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataat                          >  2:3383890/1‑91 (MQ=255)
                                                                   actattaccagtagttggggtttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAataata                         >  1:2351837‑M2/24‑91 (MQ=255)
                                                                     tattaccagtagttggggtttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATc                       >  2:250067‑M2/22‑91 (MQ=255)
                                                                      attaccagtagttggggtttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCt                      >  2:2187907‑M2/21‑91 (MQ=255)
                                                                        tGGTAATTGTCTGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTa                    <  2:3531336/91‑1 (MQ=255)
                                                                        tGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTa                    >  1:286889/1‑91 (MQ=255)
                                                                         ggTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAg                   <  2:3594695/91‑1 (MQ=255)
                                                                          gTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGt                  <  2:648623/91‑1 (MQ=255)
                                                                             aTAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCa               <  1:2732615/91‑1 (MQ=255)
                                                                              tAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCaa              >  1:301553/1‑91 (MQ=255)
                                                                               aGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTGTATAATGAATAATATCTTAGTGCAAg             <  2:3279261/91‑1 (MQ=255)
                                                                                gTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGc            >  1:2935251/1‑91 (MQ=255)
                                                                                  cGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAc          <  1:1305046/91‑1 (MQ=255)
                                                                                  cGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAc          <  1:3410409/91‑1 (MQ=255)
                                                                                  cGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAc          <  1:2221450/91‑1 (MQ=255)
                                                                                   ggggtttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAcc         >  2:1558723‑M2/8‑91 (MQ=255)
                                                                                   ggggtttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAcc         >  2:1180809‑M2/8‑91 (MQ=255)
                                                                                   ggggtttGGTAATAAAACGTTTAGAAACCGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAcc         >  1:1560769‑M2/8‑91 (MQ=255)
                                                                                     ggtttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTa       <  1:2536577‑M2/86‑1 (MQ=255)
                                                                                      gtttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTaa      >  2:1068556‑M2/5‑91 (MQ=255)
                                                                                      gtttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTaa      <  1:1371974‑M2/87‑1 (MQ=255)
                                                                                       tttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTaaa     <  1:3697968‑M2/88‑1 (MQ=255)
                                                                                       tttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTaaa     <  2:573214‑M2/88‑1 (MQ=255)
                                                                                          ggTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCa  >  1:1781530/1‑91 (MQ=255)
                                                                                          ggTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCa  >  2:3742756/1‑91 (MQ=255)
                                                                                          |                                                                                          
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCA  >  CP000731/1‑155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.