BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 997	894 (0.430)	152 (0.080)	30/138	NT	16.4%	intergenic (+9/+6)	USA300HOU_RS14890/USA300HOU_RS15665	replication protein/hypothetical protein
*	?	NC_012417	= 1001	777 (0.430)	152 (0.080)	30/138	NT	16.4%	intergenic (+13/+2)	USA300HOU_RS14890/USA300HOU_RS15665	replication protein/hypothetical protein

Only 100 of 814 total aligned reads displayed.

TGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/897‑997

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagacattagtCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTTTA  <  NC_012417/1001‑912

TGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTA                                                                                                      >  2:1198008/1‑91

TGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTA                                                                                                      >  2:2227742/1‑91

TGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTA                                                                                                      >  1:2063195/1‑91

TGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTA                                                                                                      <  2:2637705/91‑1

  CAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG                                                                                                    >  1:3736407/1‑91

  CAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAG                                                                                                    <  1:1485678/91‑1

   AAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGA                                                                                                   <  1:884967/91‑1

   AAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGA                                                                                                   >  1:1292171/1‑91

    AGTGATGAAGATCAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                                  >  1:3027779/1‑91

    AGTGATGAAGATAAAACAACAGACGAAGAAGAATAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                                  <  1:3238469/91‑1

    AGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                                  <  2:1452015/91‑1

    AGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                                  <  1:308493/91‑1

    AGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                                  >  2:2550817/1‑91

    AGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                                  >  2:3239092/1‑91

     GTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACA                                                                                                 <  1:715163/91‑1

      TGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAT                                                                                                <  1:472564/91‑1

      TGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAT                                                                                                <  1:836428/91‑1

      TGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAT                                                                                                >  1:1578516/1‑91

       gagGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATCACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATT                                                                                               <  1:2006946/88‑1

       GATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATT                                                                                               <  2:1145922/91‑1

       GATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATT                                                                                               <  2:1543845/91‑1

        ATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTA                                                                                              >  2:1837342/1‑91

        ATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTA                                                                                              >  1:2752531/1‑91

        ATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTA                                                                                              >  1:2701733/1‑91

         TGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAG                                                                                             >  1:2805405/1‑91

         TGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAG                                                                                             <  2:1912074/91‑1

         TGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAG                                                                                             <  1:1352027/91‑1

          GAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGT                                                                                            >  1:1400008/1‑91

             GATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAA                                                                                         <  1:2202138/91‑1

              ATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAAC                                                                                        <  2:716924/91‑1

              ATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAAC                                                                                        <  1:1132115/91‑1

              ATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAAC                                                                                        <  1:96429/91‑1

              ATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAAC                                                                                        <  1:3197898/91‑1

              ATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAAC                                                                                        <  1:3851605/91‑1

               TAAAACAACAGGCGAAGAAGAAAAAGCACAATCAATTACCGCAATTTGTAGTTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACA                                                                                       <  2:3861736/91‑1

               TAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACA                                                                                       <  2:2040173/91‑1

               TAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACA                                                                                       <  2:3378257/91‑1

               TAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACA                                                                                       <  2:3801216/91‑1

               TAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACA                                                                                       <  2:1367580/91‑1

               TAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACA                                                                                       <  1:2605798/91‑1

                AAAACAACGGACTAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACAC                                                                                      <  2:1574612/91‑1

                AAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCGATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACAC                                                                                      <  2:3469540/91‑1

                AAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACAC                                                                                      <  2:2425427/91‑1

                AAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACAC                                                                                      <  2:173510/91‑1

                  AACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACACTA                                                                                    <  2:1956235/91‑1

                  AACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACACTA                                                                                    <  1:2501602/91‑1

                   ACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACACTAA                                                                                   <  1:1944938/91‑1

                   ACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACACTAA                                                                                   <  1:3312978/91‑1

                   ACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTAGTTAAGACATTAGTCAACACTAA                                                                                   <  1:1441950/91‑1

                    CAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACACTAAT                                                                                  <  1:1205215/91‑1

                     AACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACACTAATG                                                                                 <  2:2351853/91‑1

                       CAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTCAACACTAATGTC                                                                               <  1:650568/91‑1

                                AAGAAAAAGCACAATCAATTATGACAATTTGGAATTGCTAAAAGCAAAAATATGATTTAAAACATTAGTCAACACTAATGTCTTAAATAAT                                                                      <  2:2899102/91‑1

                                                                               AATTATTATTTAAGACATTAGTGTTGACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTT                       >  1:2294905/1‑91

                                                                                    TTATTTAAGACATTAGTGTTGACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTC                  >  1:3662111/1‑91

                                                                                    TTATTTAAGACATTAGTGATAACTGATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTttct                  >  1:519845/1‑87

                                                                                     TATTTAAGACATTAGTGATAACTGATGTCTTAAATAATAACTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTT‑TTCTT                >  2:1635150/1‑91

                                                                                      ATTTAAGACATTAGTGTTGACTAATGTCTTAAATAATAATTTTGCTTTTCGTAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTT                >  2:3104879/1‑91

                                                                                      ATTTAAGACATTAGTGTTGACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCTAATTGCGGTAATTGAATGTGCTTTTTCTTCTT                >  1:3373193/1‑91

                                                                                      ATTTAAGACATTAGTGTTGACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTT                >  1:1014311/1‑91

                                                                                       TTTAAGACATTAGTGTTGACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTC               >  1:352632/1‑91

                                                                                          AAGACATTATTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTC            <  2:2686394/91‑1

                                                                                          AAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTC            <  2:1253562/91‑1

                                                                                          AAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTC            <  2:1076243/91‑1

                                                                                          AAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTC            <  2:1681142/91‑1

                                                                                          AAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTC            <  1:2990280/91‑1

                                                                                          AAGACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTC            <  1:2368565/91‑1

                                                                                          AAGACATTAGTCAACACTAATGTCTCAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTC            <  1:177128/91‑1

                                                                                            GACATTGGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATGGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTG          <  2:364170/91‑1

                                                                                            GACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTG          >  1:3122507/1‑91

                                                                                             ACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGCAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGT         <  1:2130231/91‑1

                                                                                             ACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGT         >  2:459047/1‑91

                                                                                             ACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGT         <  2:2474669/91‑1

                                                                                             ACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGT         >  2:1346017/1‑91

                                                                                             ACATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGT         <  2:2102938/91‑1

                                                                                              CATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTT        >  1:2447460/1‑91

                                                                                              CATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTT        >  2:2261500/1‑91

                                                                                              CATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTT        <  2:57389/91‑1

                                                                                              CATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTT        >  2:3703744/1‑91

                                                                                              CATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTT        >  2:3576148/1‑91

                                                                                               ATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTG       >  2:3129933/1‑91

                                                                                               ATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTG       >  2:903356/1‑91

                                                                                               ATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTG       >  2:2848119/1‑91

                                                                                               ATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTG       >  2:3030018/1‑91

                                                                                               ATTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTG       >  1:2554903/1‑91

                                                                                                TTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGT      <  1:1073729/91‑1

                                                                                                TTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGT      >  1:558799/1‑91

                                                                                                TTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGT      >  1:3899829/1‑91

                                                                                                TTAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGT      <  2:3958486/91‑1

                                                                                                 TAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTT     >  2:798350/1‑91

                                                                                                 TAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTT     >  1:3785526/1‑91

                                                                                                 TAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTT     >  2:6539/1‑91

                                                                                                 TAGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAACTGCGGTAATTTAATGTGCTTTTTTTTCTTCTTCTGTTGTT     >  1:1702323/1‑91

                                                                                                  AGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTT    >  2:2159846/1‑91

                                                                                                  AGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTT    >  2:1788827/1‑91

                                                                                                  AGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTT    >  1:2894137/1‑91

                                                                                                  AGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTT    <  1:1860312/91‑1

                                                                                                  AGTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTAGTCTGTTGTTT    >  1:3581250/1‑91

                                                                                                   GTCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTTT   >  2:2831543/1‑91

                                                                                                    TCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTTTA  <  2:2962650/91‑1

TGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/897‑997

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagacattagtCAACACTAATGTCTTAAATAATAATTTTGCTTTTCGAAATTCCAAATTGCGGTAATTGAATGTGCTTTTTCTTCTTCGTCTGTTGTTTTA  <  NC_012417/1001‑912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.