| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2161 | 198 (0.970) | 13 (0.070) | 10/152 | NT | 6.4% | intergenic (+256/‑22) | dnaA/dnaN | Chromosomal replication initiator protein DnaA/DNA polymerase III subunit beta |
| ? | USA300TCH1516_ALE | = 2172 | 195 (1.010) | intergenic (+267/‑11) | dnaA/dnaN | Chromosomal replication initiator protein DnaA/DNA polymerase III subunit beta | |||||
CTTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2068‑2161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCTGTGGATTGGTGGATAAGTCTTAAAAAC < USA300TCH1516_ALE/2172‑2083 CTTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATA > 2:1899755/1‑91CTTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATA < 1:1982161/91‑1 TTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAA > 2:1919963/1‑91 TTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAA > 1:175024/1‑91 TTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAA > 2:3886959/1‑91 TTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAA > 1:1982670/1‑91 TTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAA < 2:3046640/91‑1 TCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAA > 1:1415554/1‑91 CGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAAC < 2:429768/91‑1 CGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAAC > 1:3280807/1‑91 CGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAAC > 1:3280569/1‑91 AATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTT < 1:492359/91‑1 AATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTT < 2:2232644/91‑1 ATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGT < 1:2466815/91‑1 ATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGT < 2:3130477/91‑1 ATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGT < 1:1510266/91‑1 ATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGT < 1:1480145/91‑1 TGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAGCTCCTTCCAGTC < 1:3034097/91‑1 CTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGTCGTTTATATATA < 1:517464/91‑1 TATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGTCGTTTATATATAAT < 1:291003/91‑1 CCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCGGTCGGTTATATATAATTATATA < 2:1166014/91‑1 AATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGCCTGGAAGTAGTTTATATATAACTATATAGG > 2:1533892/1‑91 CACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTT < 1:2868038/91‑1 TTAAAACCTATATAATTATATATAAACTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCTG < 1:3038494/91‑1 CCTATATAATTATATATAAACGACTGGAAGGAGTTTATATAGAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCTGTGGATT > 1:3426199/1‑91 ATATAATTATATATAAACGACTGGAAGGAGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCTGTGGATTGGT > 1:2195882/1‑91 AACTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCAGTGGATTGGTGGATAAGTCTTAAAA > 1:3672161/1‑91 ACTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCTGTGGATTGGTGGATAAGTCTTAAAAA < 2:1726796/91‑1 ACTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCTGTGGATTGGTGGATAAGTCTTAAAAA < 2:1726898/91‑1 ACTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCTGTGGATTGGTGGATAAGTCTTAAAAA < 2:2169926/91‑1 ACTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCTGTGGATTGGTGGATAAGTCTTAAAAA < 1:2314310/91‑1 ACTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCTGTGGATTGGTGGATAAGTCTTAAAAA > 1:181099/1‑91 ACTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTTCTNAGTAATAGTAGNAGGTNCTGTGGATTGGTGGATAAGTCTTAAAAA > 1:1355329/1‑91 CTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCTGTGGATTGGTGGATAAGTCTTAAAAAC < 1:3628145/91‑1 CTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCTGTGGATTGGTGGATAAGTCTTAAAAAC < 1:1524259/91‑1 CTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCTGTGGATTGGTGAATAAGTATTAAAAAC < 2:949724/91‑1 CTTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2068‑2161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCTGTGGATTGGTGGATAAGTCTTAAAAAC < USA300TCH1516_ALE/2172‑2083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |