| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 27343 | 204 (1.000) | 11 (0.060) | 5/148 | NT | 5.4% | coding (1678/1827 nt) | walK | Sensor protein kinase WalK |
| ? | USA300TCH1516_ALE | = 27364 | 197 (1.050) | coding (1699/1827 nt) | walK | Sensor protein kinase WalK | |||||
GTATTAAAGATAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/27248‑27343‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatggCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTGATAG < USA300TCH1516_ALE/27364‑27275 GTATTAAAGATAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAA < 2:701332/91‑1GTATTAAAGATAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAA > 1:2102690/1‑91 ATTAAAGATAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAA < 2:3802098/91‑1 ATTAAAGATAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAA < 1:2941479/91‑1 TTAAAGATAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAAT < 2:697511/91‑1 TAAAGATAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATG < 1:1170365/91‑1 TAAAGATAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATG < 1:3831183/91‑1 AAAGATAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGG < 1:2444669/91‑1 AAAGATAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGG > 2:1247280/1‑91 AAAGATAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGG > 2:1247082/1‑91 TATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGCTAGTCCTAATCCAGTA < 1:2919810/91‑1 TATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGCTAGTCCTAATCCAGTA < 1:2919848/91‑1 TATTCCTATCAATAAAGTCGATAAGATATTCCACCGATTCTATCATGTAGATATGGCTCGTACGCGTAAAATGGCTAGTCCTAATCCAGTA < 1:3161432/91‑1 TCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGCTAGTCCTAATCCAGTACCA < 2:854222/91‑1 TCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGCTAGTCCTAATCCAGTACCA < 2:2575609/91‑1 CCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGCTAGTCCTAATCCAGTACCAC < 1:3000330/91‑1 CCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGCTAGTCCTAATCCAGTACCAC < 1:1459610/91‑1 CCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGCTAGTCCTAATCCAGTACCAC < 2:544675/91‑1 CCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGCTAGTCCTAATCCAGTACCAC < 2:1769825/91‑1 CTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGCTAGTCCTAATCCAGTACCACC < 2:2782965/91‑1 TATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGCTAGTCCTAATCCAGTACCACCC < 1:11605/91‑1 ttAATGGCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTAT > 1:3524645/3‑91 AATGGCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTG > 1:3713348/1‑91 AATGGCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTG > 1:2199884/1‑91 AATGGCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTG > 1:3713361/1‑91 ATGGCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTGA < 1:3617463/91‑1 ATGGCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTGA < 1:1310712/91‑1 ATGGCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTGA < 1:3846878/91‑1 ATGGCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTGA < 1:3618211/91‑1 GGCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTGATA > 2:1782867/1‑91 GGCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTGATA > 2:2220156/1‑91 GGCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTGATA > 1:833882/1‑91 GGCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTGATA > 1:3874152/1‑91 GGCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTGATA > 2:2900071/1‑91 GGCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTGATA > 1:1189385/1‑91 GCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTGATAG > 2:2551332/1‑91 GCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTGATAG > 2:2551385/1‑91 GTATTAAAGATAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/27248‑27343‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatggCTAGTCCTAATCCAGTACCACCCATTTTACGCGTACGTGCCTTATCTACACGATAGAATCGGTCGAATATCTTATCGACTTTATTGATAG < USA300TCH1516_ALE/27364‑27275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |