BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 27343	204 (1.000)	11 (0.060)	5/148	NT	5.4%	coding (1678/1827 nt)	walK	Sensor protein kinase WalK
*	?	USA300TCH1516_ALE	= 27364	197 (1.050)	11 (0.060)	5/148	NT	5.4%	coding (1699/1827 nt)	walK	Sensor protein kinase WalK

Only 100 of 270 total aligned reads displayed.

AAAGATAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTA  >  USA300TCH1516_ALE/27253‑27433

aaaGATAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGG                                                                                            >  2:1247280‑M1/1‑91 (MQ=255)

  aGATAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGggt                                                                                          >  2:1361596/1‑91 (MQ=255)

    aTAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGggtgg                                                                                        >  1:3763314/1‑91 (MQ=255)

     tAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGggtggt                                                                                       <  1:112818/91‑1 (MQ=255)

      aaTGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTa                                                                                      <  2:2062144/91‑1 (MQ=255)

      aaTGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTa                                                                                      <  1:1766169/91‑1 (MQ=255)

       aTGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTAc                                                                                     >  1:3312488/1‑91 (MQ=255)

       aTGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTAc                                                                                     >  1:2917912/1‑91 (MQ=255)

       aTGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTAc                                                                                     >  1:2441662/1‑91 (MQ=255)

         ggCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTg                                                                                   <  1:487215/91‑1 (MQ=255)

         ggCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTg                                                                                   >  2:3215455/1‑91 (MQ=255)

           cATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGa                                                                                 <  2:700771/91‑1 (MQ=255)

           cATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGa                                                                                 >  1:392443/1‑91 (MQ=255)

               ggTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAg                                                                             <  1:3855258/91‑1 (MQ=255)

                gTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAgg                                                                            >  1:1565096/1‑91 (MQ=255)

                gTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAgg                                                                            <  1:3125832/91‑1 (MQ=255)

                gTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTAGATTAgg                                                                            <  2:3090214/91‑1 (MQ=255)

                 tATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGctagtcctaatccagta                                                                           <  1:2919848‑M1/91‑18 (MQ=255)

                 tATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGa                                                                           >  1:216012/1‑91 (MQ=255)

                 tATTCCTATCAATAAAGTCGATAAGATATTCCACCGATTCTATCATGTAGATATGGCTCGTACGCGTAAAATGGctagtcctaatccagta                                                                           <  1:3161432‑M1/91‑18 (MQ=255)

                  aTTCCTATCAATAAAGTCGAGAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGAc                                                                          <  2:1747635/91‑1 (MQ=255)

                    tCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGctagtcctaatccagtacca                                                                        <  2:2575609‑M1/91‑21 (MQ=255)

                     ccTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATCAGGCACGTCCGCGTAAAATGGGAGGTACTGGATTAGGACTAg                                                                       >  2:2986090/1‑91 (MQ=255)

                     ccTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAg                                                                       >  1:460225/1‑91 (MQ=255)

                      cTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGc                                                                      >  2:2551332‑M2/1‑90 (MQ=255)

                       tATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGcc                                                                     >  2:2900071‑M2/1‑89 (MQ=255)

                         tCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGccat                                                                   <  1:3618211‑M2/91‑5 (MQ=255)

                             tAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCg                                                               >  1:2034798/1‑91 (MQ=255)

                              aaaGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGa                                                              >  1:3293450/1‑91 (MQ=255)

                               aaGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGaa                                                             >  2:2543544/1‑91 (MQ=255)

                               aaGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGaa                                                             >  1:1120929/1‑91 (MQ=255)

                                aGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGaaa                                                            <  1:995496/91‑1 (MQ=255)

                                 gTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAag                                                           <  1:895834/91‑1 (MQ=255)

                                 gTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAag                                                           >  2:1564096/1‑91 (MQ=255)

                                 gTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAag                                                           <  2:3851957/91‑1 (MQ=255)

                                   cGATAAGAGATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAagag                                                         <  2:44013/91‑1 (MQ=255)

                                    gATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAgaga                                                        <  1:221449/91‑1 (MQ=255)

                                    gATAAGATATTCGACCGATTCTATCGTGTAGATAACGCACGTACGCGTAACATGGGTGGTACTAGATTAGGACTAGCCATTTCGAAAgaga                                                        >  2:2663241/1‑91 (MQ=255)

                                     aTAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGAt                                                       >  1:1348654/1‑91 (MQ=255)

                                      tAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGAtt                                                      >  2:2811798/1‑91 (MQ=255)

                                      tAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGAtt                                                      <  1:146359/91‑1 (MQ=255)

                                       aaGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATtg                                                     <  2:3490165/91‑1 (MQ=255)

                                       aaGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATtg                                                     <  2:1795225/91‑1 (MQ=255)

                                        aGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATtgt                                                    <  2:113192/91‑1 (MQ=255)

                                        aGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATtgt                                                    <  2:1282507/91‑1 (MQ=255)

                                        aGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATtgt                                                    <  2:3555357/91‑1 (MQ=255)

                                        aGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATtgt                                                    <  1:1342700/91‑1 (MQ=255)

                                         gATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATtgtg                                                   >  1:2361625/1‑91 (MQ=255)

                                           tatTCGACCGATTCTATCGTGTAGATCACGCACGTCCGCGTAAAATGGGAGGTACAGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGa                                                 >  2:574014/1‑91 (MQ=255)

                                           tatTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGa                                                 >  1:2603560/1‑91 (MQ=255)

                                             ttCGACCGATTCTATCGTGTAGATCAGGCACGTCCGCGTAAAATTGGAGGTAATGGATTAGGACTAGCCATATCGAAAGAGATTGTGGAAg                                               >  2:2348450/1‑91 (MQ=255)

                                             ttCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAg                                               <  1:787960/91‑1 (MQ=255)

                                              tCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAgc                                              >  2:2735834/1‑91 (MQ=255)

                                                 aCCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGca                                           >  1:2991113/1‑91 (MQ=255)

                                                  ccGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGcac                                          >  1:3482813/1‑91 (MQ=255)

                                                  ccGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGcac                                          >  1:550139/1‑91 (MQ=255)

                                                  ccGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGCGGTACTGGATTAGGACTAGCCCTTTCGAAAGAGATTGTGGAAGCGcac                                          >  1:2498714/1‑91 (MQ=255)

                                                     aTTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAAt                                       <  1:1082715/91‑1 (MQ=255)

                                                      ttCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATg                                      <  2:862627/91‑1 (MQ=255)

                                                      ttCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATg                                      >  2:3218446/1‑91 (MQ=255)

                                                      ttCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATg                                      <  1:1814855/91‑1 (MQ=255)

                                                       tCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATgg                                     <  2:218576/91‑1 (MQ=255)

                                                        cTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGt                                    <  2:1916058/91‑1 (MQ=255)

                                                         tATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTc                                   <  2:222954/91‑1 (MQ=255)

                                                          aTCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCg                                  <  2:1471950/91‑1 (MQ=255)

                                                           tCGTGTAGATAAGGCACGTCCGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGt                                 >  2:1767479/1‑91 (MQ=255)

                                                            cGTGTAGATAAGGCATGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTa                                >  1:3886791/1‑91 (MQ=255)

                                                            cGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTa                                >  1:3590650/1‑91 (MQ=255)

                                                             gtgtAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTAt                               <  1:2216978/91‑1 (MQ=255)

                                                             gtgtAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTAt                               <  1:3028663/91‑1 (MQ=255)

                                                             gtgtAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTAt                               >  2:2474063/1‑91 (MQ=255)

                                                                aaGATAAGGCACGTAAGCGTAAACTGGGTGGTACTGGATTAGGACGAGCCGTTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTg                            <  2:3668526/90‑1 (MQ=255)

                                                                  gATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTggg                          <  2:2840901/91‑1 (MQ=255)

                                                                    tAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCa                        <  1:2538033/91‑1 (MQ=255)

                                                                      aGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCaaa                      >  1:1212519/1‑91 (MQ=255)

                                                                      aGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCaaa                      >  1:1429314/1‑91 (MQ=255)

                                                                       ggCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAAc                     <  2:559201/91‑1 (MQ=255)

                                                                       ggCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAAc                     >  1:1026791/1‑91 (MQ=255)

                                                                         cACGTACGCGTAAAATGGGGGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAg                   <  1:2560383/91‑1 (MQ=255)

                                                                           cGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAgtg                 <  1:2254425/91‑1 (MQ=255)

                                                                           cGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAgtg                 <  2:108922/91‑1 (MQ=255)

                                                                             tACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTa               >  2:3369459/1‑91 (MQ=255)

                                                                              aCGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAg              <  1:1273652/91‑1 (MQ=255)

                                                                                gcgTAGAATGGGTGGGACTGGATTAGGACTAGCCATTGCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGaa            <  2:2142213/91‑1 (MQ=255)

                                                                                gcgTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGaa            >  1:743916/1‑91 (MQ=255)

                                                                                 cgTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAg           >  1:2747147/1‑91 (MQ=255)

                                                                                  gTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAgg          <  1:1616694/91‑1 (MQ=255)

                                                                                    aaaaTGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCTCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTc        <  1:3331452/91‑1 (MQ=255)

                                                                                    aaaaTGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTc        <  2:3803277/91‑1 (MQ=255)

                                                                                     aaaTGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCa       >  1:1718531/1‑91 (MQ=255)

                                                                                      aaTGGctagtcctaatccagtaccacccattttacgcgtacgtgccttatctacacgatagaatcggtcgaatatcttatcgactttattg      >  1:3713348‑M1/1‑5 (MQ=255)

                                                                                      aaTGGctagtcctaatccagtaccacccattttacgcgtacgtgccttatctacacgatagaatcggtcgaatatcttatcgactttattg      >  1:3713361‑M1/1‑5 (MQ=255)

                                                                                       aTGGctagtcctaatccagtaccacccattttacgcgtacgtgccttatctacacgatagaatcggtcgaatatcttatcgactttattga     <  1:3846878‑M1/91‑88 (MQ=255)

                                                                                       aTGGctagtcctaatccagtaccacccattttacgcgtacgtgccttatctacacgatagaatcggtcgaatatcttatcgactttattga     <  1:3617463‑M1/91‑88 (MQ=255)

                                                                                       aTGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAg     >  1:1005277/1‑91 (MQ=255)

                                                                                         gggTGGTACTGGATTAGGACTAGccattttacgcgtacgtgccttatctacacgatagaatcggtcgaatatcttatcgactttattgata   <  1:11605‑M2/91‑69 (MQ=255)

                                                                                         ggctagtcctaatccagtaccacccattttacgcgtacgtgccttatctacacgatagaatcggtcgaatatcttatcgactttattgata   >  2:2220156‑M1/1‑2 (MQ=255)

                                                                                         ggctagtcctaatccagtaccacccattttacgcgtacgtgccttatctacacgatagaatcggtcgaatatcttatcgactttattgata   >  2:1782867‑M1/1‑2 (MQ=255)

                                                                                         ggctagtcctaatccagtaccacccattttacgcgtacgtgccttatctacacgatagaatcggtcgaatatcttatcgactttattgata   >  1:833882‑M1/1‑2 (MQ=255)

                                                                                          ggtggtACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTa  >  1:123813/1‑91 (MQ=255)

AAAGATAATGGCATTGGTATTCCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTA  >  USA300TCH1516_ALE/27253‑27433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.