BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 27343	204 (1.000)	11 (0.060)	5/148	NT	5.4%	coding (1678/1827 nt)	walK	Sensor protein kinase WalK
*	?	USA300TCH1516_ALE	= 27364	197 (1.050)	11 (0.060)	5/148	NT	5.4%	coding (1699/1827 nt)	walK	Sensor protein kinase WalK

Only 100 of 248 total aligned reads displayed.

CCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACATCTATCTTTATCACACT  >  USA300TCH1516_ALE/27274‑27452

ccTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAg                                                                                          >  1:460225/1‑91 (MQ=255)

 cTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGc                                                                                         >  2:2551385‑M2/1‑90 (MQ=255)

    tCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGccat                                                                                      <  1:3846878‑M2/91‑5 (MQ=255)

    tCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGccat                                                                                      <  1:3618211‑M2/91‑5 (MQ=255)

    tCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGccat                                                                                      <  1:1310712‑M2/91‑5 (MQ=255)

     cAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGccatt                                                                                     >  1:3713361‑M2/1‑86 (MQ=255)

     cAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGccatt                                                                                     >  1:2199884‑M2/1‑86 (MQ=255)

       aTAGAGTCGATAAGTTATTCGACCGATTCTAGCGTGTAGAGAAGGCTCGAACGCGGAATATGGGTGGTACTGGAATAGGACTAGCCATTTc                                                                                   <  2:1366388/91‑1 (MQ=255)

       aTAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGccattaa                                                                                   >  1:3524645‑M2/1‑84 (MQ=255)

         aaaGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGa                                                                                 >  1:3293450/1‑91 (MQ=255)

          aaGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAACATGGGTGGTACTGGATTAGGACTAGCCATTTCGaa                                                                                >  1:1120939/1‑91 (MQ=255)

          aaGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGaa                                                                                >  2:2543544/1‑91 (MQ=255)

           aGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGaaa                                                                               <  1:995496/91‑1 (MQ=255)

            gTCGATAAGATATTCGACCGATTCTATCGTGTATATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAag                                                                              <  1:1114942/91‑1 (MQ=255)

               gATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAgaga                                                                           >  1:1078354/1‑91 (MQ=255)

               gATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAgaga                                                                           >  2:3185258/1‑91 (MQ=255)

                aTAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGAt                                                                          <  1:881297/91‑1 (MQ=255)

                aTAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCATAAAGTGGGTGGTACTGGATTAGGACTAGCCATTTCGCAagagga                                                                          >  1:1348330/1‑89 (MQ=255)

                 tAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGAtt                                                                         >  2:2811798/1‑91 (MQ=255)

                  aaGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATtg                                                                        <  2:1795225/91‑1 (MQ=255)

                   aGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATtgt                                                                       <  2:1986939/91‑1 (MQ=255)

                   aGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATtgt                                                                       <  1:1469868/91‑1 (MQ=255)

                   aGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATtgt                                                                       <  2:1282507/91‑1 (MQ=255)

                    gATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATtgtg                                                                      >  1:2361625/1‑91 (MQ=255)

                     atatTCGACCGATTCTATCGTGTGGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTgg                                                                     >  2:2601140/1‑91 (MQ=255)

                        ttCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAg                                                                  >  1:251026/1‑91 (MQ=255)

                        ttCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAg                                                                  <  1:787960/91‑1 (MQ=255)

                         tCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAgc                                                                 <  2:3467808/91‑1 (MQ=255)

                          cGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAgcg                                                                >  2:1131764/1‑91 (MQ=255)

                           gggcGATTCTGTCGTGTAGATAACACACGTACGCGTAAAATGGGTGGTACTGGAGTAGGACTAGCCATTTCGAAAGAGATTGTCGAAgcgc                                                               <  2:3675762/88‑1 (MQ=255)

                           gACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAgcgc                                                               <  1:1587527/91‑1 (MQ=255)

                           gACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAgcgc                                                               <  1:1849161/91‑1 (MQ=255)

                           gACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAgcgc                                                               <  2:1066972/91‑1 (MQ=255)

                            aCCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGca                                                              >  1:2991113/1‑91 (MQ=255)

                             ccGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGcac                                                             >  1:2092369/1‑91 (MQ=255)

                              cGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGcaca                                                            >  1:1763677/1‑91 (MQ=255)

                                 ttCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATg                                                         <  2:862627/91‑1 (MQ=255)

                                   cTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGt                                                       <  1:91702/91‑1 (MQ=255)

                                    tATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTc                                                      <  2:222954/91‑1 (MQ=255)

                                     aTCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCg                                                     <  2:1471950/91‑1 (MQ=255)

                                     aTCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCg                                                     >  2:1620280/1‑91 (MQ=255)

                                       cGTGTAGATAAGGCATGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTa                                                   >  1:3886791/1‑91 (MQ=255)

                                        gtgtAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTAt                                                  <  1:3028663/91‑1 (MQ=255)

                                        gtgtAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTAt                                                  <  1:812194/91‑1 (MQ=255)

                                        gtgtAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTAt                                                  <  1:2216978/91‑1 (MQ=255)

                                        gtgtAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTAt                                                  >  2:2474063/1‑91 (MQ=255)

                                          gtAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTAttt                                                >  1:548899/1‑91 (MQ=255)

                                          gtAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTAttt                                                >  1:3414862/1‑91 (MQ=255)

                                             gATCAGGCACGTACGCGTAACATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATCGTCGTATTTggg                                             >  2:3287313/1‑91 (MQ=255)

                                             gATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTggg                                             <  2:2840901/91‑1 (MQ=255)

                                                 aGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCaaa                                         >  1:1212519/1‑91 (MQ=255)

                                                 aGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCaaa                                         >  1:1429314/1‑91 (MQ=255)

                                                  ggCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAAc                                        >  1:1026791/1‑91 (MQ=255)

                                                  ggCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAAc                                        <  2:559201/91‑1 (MQ=255)

                                                  ggCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAAc                                        >  1:726919/1‑91 (MQ=255)

                                                   gCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACa                                       <  1:254183/91‑1 (MQ=255)

                                                    cACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAg                                      <  1:1911589/91‑1 (MQ=255)

                                                     aCGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGGACAATGGTCGTATTTGGGCAAACAgt                                     <  2:2239669/91‑1 (MQ=255)

                                                      cGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAgtg                                    <  1:2254425/91‑1 (MQ=255)

                                                       gTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAgtgt                                   >  2:266569/1‑91 (MQ=255)

                                                       gTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAgtgt                                   >  1:2600204/1‑91 (MQ=255)

                                                        tACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTa                                  <  1:36031/91‑1 (MQ=255)

                                                         aCGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAg                                 <  2:3592235/91‑1 (MQ=255)

                                                         aCGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAg                                 >  2:2199698/1‑91 (MQ=255)

                                                         aCGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAg                                 <  2:188791/91‑1 (MQ=255)

                                                           gcgTAGAATGGGTGGGACTGGATTAGGACTAGCCATTGCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGaa                               <  2:2142213/91‑1 (MQ=255)

                                                           gcgTAACATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAAGGGCCGTCTTTGGGGAAAGAGTGTAGaa                               >  2:2366589/1‑91 (MQ=255)

                                                           gcgTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGCGATTGTGGAAGCGCACACAGGTCGTAGTCGGGCAAACAGTGCAGaa                               >  2:626806/1‑91 (MQ=255)

                                                            cgTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAg                              <  1:1383976/91‑1 (MQ=255)

                                                            cgTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAg                              >  1:2747147/1‑91 (MQ=255)

                                                               aaaaTGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTc                           <  2:436551/91‑1 (MQ=255)

                                                                aaaTGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCa                          >  1:1718531/1‑91 (MQ=255)

                                                                  aTGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAg                        >  1:1005277/1‑91 (MQ=255)

                                                                  aTGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAg                        >  1:2697504/1‑91 (MQ=255)

                                                                     ggtggtACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTa                     >  1:123813/1‑91 (MQ=255)

                                                                      gtggtACTGGATTAGGACTAGccattttacgcgtacgtgccttatctacacgatagaatcggtcgaatatcttatcgactttattgatagg                    <  2:1769825‑M2/91‑71 (MQ=255)

                                                                      gtggtACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTAc                    >  2:1770514/1‑91 (MQ=255)

                                                                      gtggtACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTAc                    <  1:482839/91‑1 (MQ=255)

                                                                       tggtACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCCAGGTACa                   >  2:3516398/1‑91 (MQ=255)

                                                                       tggtACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACa                   <  1:2944400/91‑1 (MQ=255)

                                                                       gggtACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACa                   <  2:576044/90‑1 (MQ=255)

                                                                         gtACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACatc                 >  1:167433/1‑91 (MQ=255)

                                                                         gtACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACatc                 >  1:166428/1‑91 (MQ=255)

                                                                         gtACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACatc                 <  2:268508/91‑1 (MQ=255)

                                                                         ggagtGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATAGTCGTATTTGGGCAAACAGTGTAGATGGTCAAGGTACatc                 <  2:3353701/87‑1 (MQ=255)

                                                                          tACTGGATTAGGACTAGccattttacgcgtacgtgccttatctacacgatagaatcggtcgaatatcttatcgactttattgataggaata                <  1:2919810‑M2/91‑75 (MQ=255)

                                                                          tACTGGATTAGGACTAGccattttacgcgtacgagccatatctacatgatagaatcggtggaatatcttatcgactttattgataggaata                <  1:3161432‑M2/91‑75 (MQ=255)

                                                                             tGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACatctatc             <  2:1767386/91‑1 (MQ=255)

                                                                               gATTCGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACATCTATCtt           >  1:3125618/1‑91 (MQ=255)

                                                                               gATTAGGACTAGCCATTTCGAAAGAGATTGTCGAAGCGCACTATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACATCTATCtt           >  2:3005274/1‑91 (MQ=255)

                                                                                aTTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACATCTATCttt          >  2:3807574/1‑91 (MQ=255)

                                                                                   aGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGCAGGTCAAGGTACATCTATCTTTATc       >  1:3666878/1‑91 (MQ=255)

                                                                                   aGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACATCTATCTTTATc       >  1:3938990/1‑91 (MQ=255)

                                                                                   aGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACATCTATCTTTATc       >  1:2982426/1‑91 (MQ=255)

                                                                                   aGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACATCTATCTTTATc       >  2:781786/1‑91 (MQ=255)

                                                                                    ggACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACATCTATCTTTATca      <  2:508845/91‑1 (MQ=255)

                                                                                    ggACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACATCTATCTTTATca      >  2:1928619/1‑91 (MQ=255)

                                                                                      aCTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACATCTATCTTTATcaca    <  1:3475898/91‑1 (MQ=255)

                                                                                      aCTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACATCTATCTTTATcaca    <  1:2468342/91‑1 (MQ=255)

                                                                                       cTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACATCTATCTTTATCacac   <  1:734891/91‑1 (MQ=255)

CCTATCAATAAAGTCGATAAGATATTCGACCGATTCTATCGTGTAGATAAGGCACGTACGCGTAAAATGGGTGGTACTGGATTAGGACTAGCCATTTCGAAAGAGATTGTGGAAGCGCACAATGGTCGTATTTGGGCAAACAGTGTAGAAGGTCAAGGTACATCTATCTTTATCACACT  >  USA300TCH1516_ALE/27274‑27452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.