| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 34819 | 169 (0.830) | 17 (0.100) | 10/136 | NT | 10.4% | coding (307/1257 nt) | USA300HOU_RS00135 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 34830 | 150 (0.870) | coding (318/1257 nt) | USA300HOU_RS00135 | hypothetical protein | |||||
GGATTTCAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/34718‑34819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acttatctttgaCCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGTTAT < USA300TCH1516_ALE/34830‑34741 GGATTTCAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑A < 1:2541238/91‑1GGATTTCAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑A > 1:776895/1‑91GGATTTCAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑A < 2:1639639/91‑1GGATTTCAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑A < 2:1606543/91‑1GGATTTCAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑A < 2:1401181/91‑1 TTTCAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTT > 1:435193/1‑91 TTTCAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTT < 2:259218/91‑1 TTTCAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTT < 2:1824220/91‑1 TTCAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGGAGGAGAAGGCATAT‑ACTTA < 1:1850220/91‑1 TTCAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTA < 1:3098368/91‑1 TTCAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTA < 1:348818/91‑1 TCAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTAT > 1:2649045/1‑91 TCAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTAT < 2:1389500/91‑1 TCAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAAGCATAT‑ACTTAT < 1:3041180/91‑1 CAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATC > 2:1345135/1‑91 CAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATC > 1:2666815/1‑91 AATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTCTTTGGTATATCTTTTTCATCCGGAAGGTGAAGGCATAT‑ACTTATCT > 2:1053749/1‑91 AATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCT < 1:2431030/91‑1 AATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCT > 2:2746555/1‑91 AATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCT > 2:2746583/1‑91 AATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCT > 1:2555674/1‑91 AATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCT > 2:3872967/1‑91 AATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCT < 2:731013/91‑1 AATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGCCAGGAGAAGGCGTAT‑ACTTATCT > 2:3011216/1‑91 ATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTT < 2:2404110/91‑1 ATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTT > 2:3808424/1‑91 ATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTT > 2:907060/1‑91 ATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTT > 1:3014992/1‑91 TATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTT > 1:1107313/1‑91 ATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGTAGGAGAAGGCATAT‑ACTTATCTTTG > 1:3681873/1‑91 ATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTG > 1:2957328/1‑91 TATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGA < 2:3573287/91‑1 TATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGA < 1:2899494/91‑1 AGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGACCATCCT < 2:868392/91‑1 AGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGACCATCCT < 1:1520012/91‑1 GAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGACCATCCTT < 2:2978459/91‑1 GAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGACCATCCTT < 2:2978133/91‑1 ATATCAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGACCATCCTTGATT < 1:3064341/91‑1 ATAACAATAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGACCATCCTTGATT < 1:1961905/91‑1 ATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGACCATCCTTGATT < 2:3666038/91‑1 ATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGACCATCCTTGATT < 1:2241946/91‑1 AACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGACCATCCTTGATTCA < 1:1786084/91‑1 AACAAAAGAAACAAAGGATGGATATTATTAGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGACCATCCTTGATTCA < 1:2189293/91‑1 AAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGACCATCCTTGATTCAAAGA < 2:3554849/91‑1 AAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGACCATCCTTGATTCAAAGA < 2:902115/91‑1 AAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGACCATCCTTGATTCAAAGAT < 2:609400/91‑1 AGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGACCATCCTTGATTCAAAGATA < 1:2057121/91‑1 GAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGACCATCCTTGATTCAAAGATAA < 1:2925534/91‑1 ACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATCACTTATCTTTGACCATCCTTGATTCAAAGATAAGT < 1:889118/91‑1 AAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGACCATCCTTGATTCAAAGATAAGTATAT < 1:3797222/91‑1 cgCTTATCTTTGACCATCCGTGATTAAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAGAGATATACCAAATAATATCCATCCTTTGT < 2:1636146/89‑1 ACTTATCTTTGACCATCCTTGATTCAAAGATATGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTT < 1:3363153/91‑1 ACTTATCTTTGACCATCCTTGATTCAAAGATAGGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTT < 1:3363290/91‑1 ACTTATCTTTGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTa > 2:3930606/1‑90 ACTTATCTTTGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTT > 2:3793709/1‑91 CTTATCTTTGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTT < 1:1625431/91‑1 TTATCTTTGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTC < 1:1474911/91‑1 TTATCTTTGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTC < 1:1474895/91‑1 TTATCTTTGACCATCCTTGATTCAAAGATAAGTATATGCCTNCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTC < 2:1989686/91‑1 ATCTTTGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTT > 2:692700/1‑91 ATCTTTGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTT > 1:2501768/1‑91 TCTTTGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTT < 1:34538/91‑1 TCTTTGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTT < 2:2387350/91‑1 TCTTTGACCAGCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTT < 2:3657868/91‑1 CTTTGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTT > 2:3157726/1‑91 TTTGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTG > 1:2527389/1‑91 TTTGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTG < 1:90087/91‑1 TTGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGT > 2:1979919/1‑91 TTGACCATCCTTGATTCAAAGATAAGTATAGGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGT < 1:63242/91‑1 TGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGTT > 1:332830/1‑91 TGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGTT > 2:171224/1‑91 TGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGTT < 2:139424/91‑1 TGACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGTT > 1:332890/1‑91 TGACCATCCTTGACTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTCTGTT > 2:1325951/1‑91 tACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGTTA < 2:2750427/90‑1 GACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGTTA < 1:3029232/91‑1 GACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGTTA < 1:1737912/91‑1 GACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGTTA < 1:1738741/91‑1 GACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGTTA < 1:1752734/91‑1 GACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGTTA < 2:2256530/91‑1 ACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGTTAT < 1:1271572/91‑1 ACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGTTAT > 1:244995/1‑91 ACCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGTTAT < 2:1046151/91‑1 ACCATCCTTGATTCAAAGATAAGTATATGCCTTCTACTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGTTAT < 1:3666267/91‑1 GGATTTCAATATATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/34718‑34819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acttatctttgaCCATCCTTGATTCAAAGATAAGTATATGCCTTCTCCTTCCGGATGAAAAAGATATACCAAATAATATCCATCCTTTGTTTCTTTTGTTAT < USA300TCH1516_ALE/34830‑34741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |