BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 34819	169 (0.830)	17 (0.100)	10/136	NT	10.4%	coding (307/1257 nt)	USA300HOU_RS00135	hypothetical protein
*	?	USA300TCH1516_ALE	= 34830	150 (0.870)	17 (0.100)	10/136	NT	10.4%	coding (318/1257 nt)	USA300HOU_RS00135	hypothetical protein

Only 100 of 233 total aligned reads displayed.

TATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCAATAAATATATTACA  >  USA300TCH1516_ALE/34740‑34920

tataACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATgg                                                                                            >  2:2406335/1‑91 (MQ=255)

 ataACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGt                                                                                           >  1:244995‑M2/1‑90 (MQ=255)

  taACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGtc                                                                                          <  1:3029232‑M2/91‑3 (MQ=255)

  taACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGtc                                                                                          <  1:1752734‑M2/91‑3 (MQ=255)

   aaCAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGtca                                                                                         >  1:332890‑M2/1‑88 (MQ=255)

     cAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGtcaaa                                                                                       <  1:90087‑M2/91‑6 (MQ=255)

        aaGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGtcaaagat                                                                                    >  2:692700‑M2/1‑83 (MQ=255)

          gAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGNAGGCATATACTTATCTTTGAATCAAGGATGGtcaaagataa                                                                                  <  2:1989686‑M2/91‑11 (MQ=255)

           aaaCAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGtcaaagataag                                                                                 <  1:1625431‑M2/91‑12 (MQ=255)

            aaCAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACCTATCTTTGAATCAAGGATGGtcaaagataagt                                                                                <  1:3363290‑M2/91‑13 (MQ=255)

               aaaGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGat                                                                             >  1:40330/1‑91 (MQ=255)

               aaaGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGat                                                                             <  2:2541540/91‑1 (MQ=255)

               aaaGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGat                                                                             >  2:3076840/1‑91 (MQ=255)

               aaaGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGat                                                                             >  1:111890/1‑91 (MQ=255)

                aaGGATGGATATTGTTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCAGATACTTATCTTTGAATCAAGGATGGTCAAAGAGAAGTGata                                                                            <  2:1900639/91‑1 (MQ=255)

                aaGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGata                                                                            <  2:278907/91‑1 (MQ=255)

                aaGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGata                                                                            <  1:1483635/91‑1 (MQ=255)

                aaGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGata                                                                            >  1:1021923/1‑91 (MQ=255)

                 aGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGatat                                                                           <  1:1770633/91‑1 (MQ=255)

                   gatggatATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGt                                                                         >  2:1705196/1‑91 (MQ=255)

                      ggatATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTc                                                                      >  1:3190720/1‑91 (MQ=255)

                           ttattTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCgg                                                                 >  2:2264754/1‑91 (MQ=255)

                           ttattTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCgg                                                                 >  2:2285576/1‑91 (MQ=255)

                             attTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGa                                                               <  1:961371/91‑1 (MQ=255)

                               ttGGTATATCTGTTTCAGCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGGGATATGTTTCCGCGGGATa                                                             <  2:45707/91‑1 (MQ=255)

                                tGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATaa                                                            >  1:2648620/1‑91 (MQ=255)

                                tGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATaa                                                            >  1:3939922/1‑91 (MQ=255)

                                  gTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATaaaa                                                          >  1:231866/1‑91 (MQ=255)

                                   tataTCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATaaaaa                                                         <  1:3812383/91‑1 (MQ=255)

                                   tataTCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATaaaaa                                                         <  2:1673134/91‑1 (MQ=255)

                                    atatCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAAt                                                        <  1:1436584/91‑1 (MQ=255)

                                     tatCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAAtg                                                       >  1:2512196/1‑91 (MQ=255)

                                      atCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAAtgc                                                      <  2:897634/91‑1 (MQ=255)

                                       tCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAAtgct                                                     >  1:698975/1‑91 (MQ=255)

                                         tttttCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAAtgctgc                                                   <  2:3217642/91‑1 (MQ=255)

                                             tCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCaaaa                                               >  1:3855600/1‑91 (MQ=255)

                                               aTCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACa                                             <  2:2085405/91‑1 (MQ=255)

                                               aTCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACa                                             >  2:1518370/1‑91 (MQ=255)

                                                tCCGTAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACaa                                            >  2:1950260/1‑91 (MQ=255)

                                                tCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACaa                                            >  1:2817952/1‑91 (MQ=255)

                                                tCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACaa                                            >  1:1389751/1‑91 (MQ=255)

                                                 ccGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACaaa                                           >  1:2357059/1‑91 (MQ=255)

                                                 ccGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACaaa                                           <  2:876497/91‑1 (MQ=255)

                                                  gggAAGGAGAAGGCATATACGTATCTTGGAATCAAGGATGGTCAAAGATAAGGGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAag                                          <  2:1595816/90‑1 (MQ=255)

                                                  cGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAag                                          >  2:3703095/1‑91 (MQ=255)

                                                  cGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAag                                          >  1:746986/1‑91 (MQ=255)

                                                   ggAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAaga                                         >  1:3126509/1‑91 (MQ=255)

                                                      aGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCa                                      <  2:2640961/91‑1 (MQ=255)

                                                       ggAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGCTATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCAt                                     <  1:3433053/91‑1 (MQ=255)

                                                       ggAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCAt                                     <  1:227390/91‑1 (MQ=255)

                                                       cgagaAGGCATATACTTATCTTTGAATCAAGGATGGGCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCAt                                     <  2:3913975/90‑1 (MQ=255)

                                                        gagaAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCAtt                                    >  1:618972/1‑91 (MQ=255)

                                                         agaAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTa                                   >  1:3105749/1‑91 (MQ=255)

                                                          gaAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTaa                                  >  1:1051306/1‑91 (MQ=255)

                                                          gaAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTaa                                  <  2:3687706/91‑1 (MQ=255)

                                                          gaAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTaa                                  >  1:563849/1‑91 (MQ=255)

                                                           aaagCATATACTTATCGTTGAATCAAGGATGGTAAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAGAGAGCATTAAc                                 <  2:1250756/88‑1 (MQ=255)

                                                           aaGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAAc                                 <  2:1393407/91‑1 (MQ=255)

                                                           aaGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAAc                                 >  2:2191498/1‑91 (MQ=255)

                                                           aaGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAAc                                 >  1:373750/1‑91 (MQ=255)

                                                           aaGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGGTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAAc                                 <  1:3809899/91‑1 (MQ=255)

                                                            aGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACt                                <  1:3629285/91‑1 (MQ=255)

                                                             ggCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACtt                               <  1:2037081/91‑1 (MQ=255)

                                                               cATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTa                             <  2:296815/91‑1 (MQ=255)

                                                               cATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTa                             <  1:664555/91‑1 (MQ=255)

                                                                 tataCTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATc                           <  1:1297900/91‑1 (MQ=255)

                                                                 tataCTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATc                           <  1:1887170/91‑1 (MQ=255)

                                                                  ataCTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCt                          <  1:2763992/91‑1 (MQ=255)

                                                                   taCTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCtt                         >  1:932123/1‑91 (MQ=255)

                                                                   taCTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCtt                         >  2:3269668/1‑91 (MQ=255)

                                                                      ttATCTTTGAATCAAGGATGGtcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttc                      <  1:2925534‑M2/91‑71 (MQ=255)

                                                                      ttATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCg                      <  2:2798134/91‑1 (MQ=255)

                                                                        aTCTTTGAATCAAGGATGGtcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttctt                    <  2:609400‑M2/91‑73 (MQ=255)

                                                                        aTCTTTGAATCAAGGATGGTCAAAGATAAGAGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGaa                    >  2:1454/1‑91 (MQ=255)

                                                                         tCTTTGAATCAAGGATGGtcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttcttt                   <  2:3554849‑M2/91‑74 (MQ=255)

                                                                         tCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACACAGAGCATTAACTTTATCTTCCGAAc                   >  1:3684209/1‑91 (MQ=255)

                                                                         tCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAAc                   >  2:3531184/1‑91 (MQ=255)

                                                                         tCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAAc                   <  2:83946/91‑1 (MQ=255)

                                                                           tttGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTc                 <  1:602519/91‑1 (MQ=255)

                                                                           tttGAATCAAGGATGGACAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTc                 >  1:826677/1‑91 (MQ=255)

                                                                             tGAATCAAGGATGGtcaaagataagtatatgccttctccttccggatgaaaaagatatacctaataatatccatcctttgtttcttttgtt               <  1:2189293‑M2/91‑78 (MQ=255)

                                                                             tGAATCAAGGATGGtcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttcttttgtt               <  1:1786084‑M2/91‑78 (MQ=255)

                                                                             tGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCaa               >  2:3368058/1‑91 (MQ=255)

                                                                               aaTCAAGGATGGtcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttctattgttat             <  1:1961905‑M2/91‑80 (MQ=255)

                                                                               aaTCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCaata             >  2:3247066/1‑91 (MQ=255)

                                                                               aaTCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCaata             <  2:1303134/91‑1 (MQ=255)

                                                                                aTCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCaataa            <  2:1686821/91‑1 (MQ=255)

                                                                                 tCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCaataaa           <  1:2725542/91‑1 (MQ=255)

                                                                                  cAAGGATGGTCAAAGAGAAGTGATATGTGTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCaataaat          <  2:4929/91‑1 (MQ=255)

                                                                                   aaGGATGGtcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttcttttgttatattc         <  2:2978459‑M2/91‑84 (MQ=255)

                                                                                    aGGATGGtcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttcttttgttatattct        <  1:1520012‑M2/91‑85 (MQ=255)

                                                                                    aGGATGGtcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttcttttgttatattct        <  2:868392‑M2/91‑85 (MQ=255)

                                                                                    aGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCAATAAatat        >  2:2433354/1‑91 (MQ=255)

                                                                                    aGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCAATAAatat        >  1:2086389/1‑91 (MQ=255)

                                                                                    aGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCAATAAatat        >  1:1189315/1‑91 (MQ=255)

                                                                                     tgATGGACAAAGATAAGTGATATGTTTCCGCGAGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTAACTTCCGAACTCAATAAaaata       >  2:3144383/2‑91 (MQ=255)

                                                                                       aTGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCAATAAATATAtt     >  2:519805/1‑91 (MQ=255)

                                                                                        tGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCAATAAATATATTa    >  1:2541374/1‑91 (MQ=255)

                                                                                          gTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCAATAAATATATTACa  >  1:2802102/1‑91 (MQ=255)

                                                                                          gTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCAATAAATATATTACa  >  2:1460535/1‑91 (MQ=255)

TATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCAATAAATATATTACA  >  USA300TCH1516_ALE/34740‑34920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.