| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 34819 | 169 (0.830) | 17 (0.100) | 10/136 | NT | 10.4% | coding (307/1257 nt) | USA300HOU_RS00135 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 34830 | 150 (0.870) | coding (318/1257 nt) | USA300HOU_RS00135 | hypothetical protein | |||||
Only 100 of 289 total aligned reads displayed.
TATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCAATA > USA300TCH1516_ALE/34729‑34909 | tatGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGA < 1:2899494‑M1/91‑1 (MQ=255) atgatgAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTCTTTCATCCGGAAGGAGGAGGCATAT‑ACTTATCTTTGaa > 2:776762/1‑91 (MQ=255) tgatgaGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAAt > 1:1484661/1‑91 (MQ=255) tgatgaGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAAt > 1:3779200/1‑91 (MQ=255) tgaGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCAGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCaa > 2:1152262/1‑91 (MQ=255) agaATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAgg < 1:641847/91‑1 (MQ=255) gaATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGa > 1:3618511/1‑91 (MQ=255) atatAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATg < 1:1027907/91‑1 (MQ=255) tataACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATgg > 2:427590/1‑91 (MQ=255) tataACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATgg > 2:3177361/1‑91 (MQ=255) tataACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATgg > 1:1625352/1‑91 (MQ=255) ataACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGTAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGt < 1:3666267‑M2/91‑2 (MQ=255) ataACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAccatccttgatt < 1:2241946‑M1/91‑13 (MQ=255) ataACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGt < 1:1271572‑M2/91‑2 (MQ=255) ataACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGt < 2:1046151‑M2/91‑2 (MQ=255) taACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGtc < 1:1752734‑M2/91‑3 (MQ=255) taACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGta < 2:2750427‑M2/91‑3 (MQ=255) aaCAGAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAGTCAAGGATGGtca > 2:1325951‑M2/1‑88 (MQ=255) aaCAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGtca < 2:139424‑M2/91‑4 (MQ=255) aaCAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGtca > 2:171224‑M2/1‑88 (MQ=255) aaCAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGtca > 1:332890‑M2/1‑88 (MQ=255) aaCAAAAGAAACAAAGGATGGATATTATTAGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAccatccttgattca < 1:2189293‑M1/91‑15 (MQ=255) cAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGtcaaa < 1:90087‑M2/91‑6 (MQ=255) cAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGtcaaa > 1:2527389‑M2/1‑86 (MQ=255) aaaGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAccatccttgattcaaaga < 2:902115‑M1/91‑19 (MQ=255) aaGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAccatccttgattcaaagat < 2:609400‑M1/91‑20 (MQ=255) aaGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGtcaaagat > 1:2501768‑M2/1‑83 (MQ=255) gAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGNAGGCATAT‑ACTTATCTTTGAATCAAGGATGGtcaaagataa < 2:1989686‑M2/91‑11 (MQ=255) aaaCAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGtcaaagataag < 1:1625431‑M2/91‑12 (MQ=255) aaCAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGtcaaagataagt > 2:3793709‑M2/1‑79 (MQ=255) aaCAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACATATCTTTGAATCAAGGATGGtcaaagataagt < 1:3363153‑M2/91‑13 (MQ=255) aCAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATATCACTTATCTTTGAccatccttgattcaaagataagt < 1:889118‑M1/91‑24 (MQ=255) aCAAAGGATGGATATTATTTGGTATATCTCTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTTAATCACGGATGGtcaaagataagcg < 2:1636146‑M2/91‑14 (MQ=255) aaaGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGat > 1:3384437/1‑91 (MQ=255) aaGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGata > 1:1021923/1‑91 (MQ=255) aGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGatat < 1:2278578/91‑1 (MQ=255) ggatggatATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATg < 2:252905/91‑1 (MQ=255) gatggatATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGt < 2:304585/91‑1 (MQ=255) gatggatATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGt > 2:1705150/1‑91 (MQ=255) atggatATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGtt < 1:2711052/91‑1 (MQ=255) ggatATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTc > 1:493786/1‑91 (MQ=255) atatTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCcg < 2:2126827/91‑1 (MQ=255) ttattTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCgg > 2:2264754/1‑91 (MQ=255) tattTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCggg > 1:2804296/1‑91 (MQ=255) attTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGa < 1:961371/91‑1 (MQ=255) tGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATaa > 1:3939922/1‑91 (MQ=255) gTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATaaaa > 1:231986/1‑91 (MQ=255) gTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATaaaa < 2:1570019/91‑1 (MQ=255) atatCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAAt < 1:3111832/91‑1 (MQ=255) atatCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAAt < 1:1436584/91‑1 (MQ=255) atatCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAAt > 1:1825552/1‑91 (MQ=255) tCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAAtgct > 1:1780419/1‑91 (MQ=255) tttttCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAACAtgctgc > 2:1274243/1‑91 (MQ=255) tCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCaaaa > 1:3855600/1‑91 (MQ=255) aTCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACa > 2:3289522/1‑91 (MQ=255) aTCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACa > 2:1518370/1‑91 (MQ=255) aTCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACa > 1:1162607/1‑91 (MQ=255) tCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACaa > 1:1389751/1‑91 (MQ=255) tCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACaa > 2:1949317/1‑91 (MQ=255) ccGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACaaa < 2:876497/91‑1 (MQ=255) gggAAGGAGAAGGCATAT‑ACGTATCTTGGAATCAAGGATGGTCAAAGATAAGGGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAag < 2:1595816/90‑1 (MQ=255) cGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAag > 2:3703095/1‑91 (MQ=255) aGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCa < 2:2640961/91‑1 (MQ=255) aGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCa > 2:852772/1‑91 (MQ=255) ggAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGCTATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCAt < 1:3433053/91‑1 (MQ=255) cgagaAGGCATAT‑ACTTATCTTTGAATCAAGGATGGGCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCAt < 2:3913975/90‑1 (MQ=255) gagaAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCAtt < 1:1895436/91‑1 (MQ=255) gagaAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCAtt > 1:618972/1‑91 (MQ=255) agaAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTa > 1:2010030/1‑91 (MQ=255) gaAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTaa > 1:1051306/1‑91 (MQ=255) gaAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTaa > 1:563862/1‑91 (MQ=255) aaGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAAc > 1:373750/1‑91 (MQ=255) aaGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGGTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAAc < 1:3809899/91‑1 (MQ=255) aGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACt > 1:707628/1‑91 (MQ=255) ggCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACtt < 1:682751/91‑1 (MQ=255) t‑aCTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCtt > 1:938347/1‑91 (MQ=255) t‑aCTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGATGCAAAACAAAGAGCATTAACTTTATCtt > 1:3179173/1‑91 (MQ=255) aCTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTc < 2:506449/91‑1 (MQ=255) cTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTcc > 2:1454076/1‑91 (MQ=255) ttATCTTTGAccatccttgattcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttc < 1:1474911‑M1/91‑82 (MQ=255) ttATCTTTGAATCAAGGATGGtcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttc < 1:2925534‑M2/91‑71 (MQ=255) ttATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCg < 2:2798134/91‑1 (MQ=255) tATCTTTGAATCAAGGATGGtcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttct < 1:2057121‑M2/91‑72 (MQ=255) aTCTTTGAccatccttgattcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttctt > 2:692700‑M1/1‑8 (MQ=255) tCTTTGAccatccttgattcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttcttt < 2:2387350‑M1/91‑85 (MQ=255) tCTTTGAccagccttgattcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttcttt < 2:3657868‑M1/91‑85 (MQ=255) tCTTTGAATCAAGGATGGtcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttcttt < 2:3554849‑M2/91‑74 (MQ=255) tCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAAc > 2:2970956/1‑91 (MQ=255) tCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAAc > 2:3531184/1‑91 (MQ=255) cTTTGAccatccttgattcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttctttt > 2:3157726‑M1/1‑6 (MQ=255) tttGAATCAAGGATGGACAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTc > 1:826677/1‑91 (MQ=255) ttGAccatccttgattcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttcttttgt > 2:1979919‑M1/1‑4 (MQ=255) tGAccatccttgattcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttcttttgtt > 1:332830‑M1/1‑3 (MQ=255) gAccatccttgattcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttcttttgtta < 2:2256530‑M1/91‑90 (MQ=255) gAccatccttgattcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttcttttgtta < 1:3029232‑M1/91‑90 (MQ=255) gAccatccttgattcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttcttttgtta < 1:1738741‑M1/91‑90 (MQ=255) accatccttgattcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttcttttgttat > 1:244995‑M1/1‑1 (MQ=255) aaTCAAGGATGGtcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttcttttgttat < 2:3666038‑M2/91‑80 (MQ=255) aaTCAAGGATGGtcaaagataagtatatgccttctccttccggatgaaaaagatataccaaataatatccatcctttgtttcttttgatat < 1:3064341‑M2/91‑80 (MQ=255) aaTCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCaata > 2:3247066/1‑91 (MQ=255) | TATGATGAGAATATAACAAAAGAAACAAAGGATGGATATTATTTGGTATATCTTTTTCATCCGGAAGGAGAAGGCATAT‑ACTTATCTTTGAATCAAGGATGGTCAAAGATAAGTGATATGTTTCCGCGGGATAAAAATGCTGCAAAACAAAGAGCATTAACTTTATCTTCCGAACTCAATA > USA300TCH1516_ALE/34729‑34909 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |