| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 54568 | 227 (1.110) | 16 (0.080) | 9/156 | NT | 6.7% | intergenic (+15/+609) | USA300HOU_RS00220/gloC_1 | hypothetical protein/Hydroxyacylglutathione hydrolase GloC |
| ? | USA300TCH1516_ALE | = 54603 | 221 (1.110) | intergenic (+50/+574) | USA300HOU_RS00220/gloC_1 | hypothetical protein/Hydroxyacylglutathione hydrolase GloC | |||||
TAGAATCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/54477‑54568‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agATGCGAAGCATTTGTATAATCCAAACACTTCGCACCTATCTCTTGTTTTTTTATTTATTCCTAAAGAAAGACTCTAAACTTTTAATTACT < USA300TCH1516_ALE/54603‑54514 TAGAATCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATA > 1:1265066/1‑91TAGAATCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATA > 1:3822312/1‑91 AGAATCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAG < 1:154832/91‑1 ATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGATGCGAAGCATTTGTATAA < 1:1929176/91‑1 TGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGCATTTGTATAATCCA < 2:2084180/91‑1 TGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGCATTTGTATAATCCA < 1:849913/91‑1 TGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTGCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGCATTTGTATAATCCA < 2:2527795/91‑1 CGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGCATTTGTATAATCCAAA < 1:1776038/91‑1 CGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGCATTTGTATAATCCAAA < 2:2707692/91‑1 CGAACTAAAAAAGTAATTAAAAGTTTAGAGTCGTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGCATTTGTATAATCCAAA < 2:1131808/91‑1 GAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGCATTTGTATAATCCAAAC < 1:1139627/91‑1 GAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGCATTTGTATAATCCAAAC < 1:1315613/91‑1 GAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGATGCGAAGCATTTGTATAATCCAAAC < 2:1659932/91‑1 GAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCGTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGCATTTGTATAATCCAAAC < 2:307987/91‑1 AACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGATGCGAAGCATTTGTATAATCCAAACA < 1:1904759/91‑1 ACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGATGCGAAGCATTTGTATAATCCAAACAC < 1:3770890/91‑1 CTATAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGCATTTGTATAATCCAAACACT < 1:3121084/91‑1 AAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGATGCGAAGCATTTGTATAATCCAAACACTTCG < 1:2932099/91‑1 AAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGATGCGAAGCATTTGTATAATCCAAACACTTCGCACCTATCTCT < 1:227207/91‑1 AGATGCGAAGCATTTGTATAATCCAAACACTTCGCACCTATCTCTTGTTTTTTTATTTATTCCTAAAGAAAGACTCTAAACTTTTAATTAC > 2:1704815/1‑91 AGATGCGAAGCATTTGTATAATCCAAACACTTCGCACCTATCTCTTGTTTTTTTATTTATTCCTAAAGAAAGACTCTAAACTTTTAATTAC > 2:1764983/1‑91 AGATGCGAAGCATTTGTATAATCCAAACACTTCGCACCTATCTCTTGTTTTTTTATTTATTCCTAAAGAAAGACTCTAAACTTTTAATTAC > 1:2096889/1‑91 AGATGCGAAGCATTTGTATAATCCAAACACTTCGCACCTATCTCTTGTTTTTTTATTTATTCCTAAAGAAAGACTCTAAACTTTTAATTAC > 2:2699680/1‑91 AGATGCGAAGCATTTGTATAATCCAAACACTTCGCACCTATCTCTTGTTTTTTTATTTATTCCTAAAGAAAGACTCTAAACTTTTAATTAC < 2:3328959/91‑1 GATGCGAAGCATTTGTATAATCCAAACACTTCGCACCTATCTCTTGTTTTTTTTTTTTTTCCTAAAGAAAGACTCTCAACTTTTAATTACT > 2:668504/1‑91 GATGCGAAGCATTTGTATAATCCAAACACTTCGCACCTATCTCTTGTTTTTTTATTTATTCCTAAAGAAAGACTCTAAACTTTTAATTACT < 2:58483/91‑1 GATGCGAAGCATTTGTATAATCCAAACACTTCGCACCTATCTCTTGTTTTTTTATTTATTCCTAAAGAAAGACTCTAAACTTTTAATTACT < 1:467911/91‑1 TAGAATCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/54477‑54568‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agATGCGAAGCATTTGTATAATCCAAACACTTCGCACCTATCTCTTGTTTTTTTATTTATTCCTAAAGAAAGACTCTAAACTTTTAATTACT < USA300TCH1516_ALE/54603‑54514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |