BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 54568	227 (1.110)	16 (0.080)	9/156	NT	6.7%	intergenic (+15/+609)	USA300HOU_RS00220/gloC_1	hypothetical protein/Hydroxyacylglutathione hydrolase GloC
*	?	USA300TCH1516_ALE	= 54603	221 (1.110)	16 (0.080)	9/156	NT	6.7%	intergenic (+50/+574)	USA300HOU_RS00220/gloC_1	hypothetical protein/Hydroxyacylglutathione hydrolase GloC

Only 100 of 269 total aligned reads displayed.

AAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACTTCATAAAGGGATTTTG  >  USA300TCH1516_ALE/54513‑54693

aaGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCAt                                                                                            >  2:3077826/1‑91 (MQ=255)

 aGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATc                                                                                           <  1:467911‑M2/91‑2 (MQ=255)

  gTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATct                                                                                          >  2:1764983‑M2/1‑89 (MQ=255)

  gTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATct                                                                                          >  2:1704815‑M2/1‑89 (MQ=255)

      ttAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGATTGGATTATACAAATGCTTCGAATCTtata                                                                                      >  2:1171299/1‑91 (MQ=255)

       tAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTatat                                                                                     >  2:2370578/1‑91 (MQ=255)

        aaaaGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTAtatt                                                                                    >  1:1040322/1‑91 (MQ=255)

        aaaaGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTAtatt                                                                                    >  1:2052198/1‑91 (MQ=255)

            gTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTAtatttatt                                                                                >  1:2960508/1‑91 (MQ=255)

            gTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTAtatttatt                                                                                >  1:2053141/1‑91 (MQ=255)

              ttAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATtaa                                                                              <  2:7394/91‑1 (MQ=255)

               tAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATtaat                                                                             <  1:97334/91‑1 (MQ=255)

                agagTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATtaata                                                                            <  1:167103/91‑1 (MQ=255)

                agagTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATtaata                                                                            >  2:1494508/1‑91 (MQ=255)

                 gagTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATtaataa                                                                           >  1:3734/1‑91 (MQ=255)

                 gagTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATtaataa                                                                           >  1:3182695/1‑91 (MQ=255)

                 gagTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATtaataa                                                                           >  1:159333/1‑91 (MQ=255)

                 gagTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATtaataa                                                                           >  2:1893071/1‑91 (MQ=255)

                 gagTCTTACTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGTATTATACAAATTTTTCGCATCTTATATTTATtaataa                                                                           >  2:3684724/1‑91 (MQ=255)

                  agTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGCAGCGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTaataaa                                                                          >  2:2678891/1‑91 (MQ=255)

                  agTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTaataaa                                                                          <  2:3230664/91‑1 (MQ=255)

                  agTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTaataaa                                                                          >  2:2300795/1‑91 (MQ=255)

                   gTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTaataaat                                                                         >  1:1461206/1‑91 (MQ=255)

                   gTCTTTCTTTAGAAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTaataaat                                                                         <  2:1348865/91‑1 (MQ=255)

                    tctttcttTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTaataaata                                                                        <  2:1471183/91‑1 (MQ=255)

                     ctttctttAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAatat                                                                       <  2:890447/91‑1 (MQ=255)

                      tttctttAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATc                                                                      <  1:439456/91‑1 (MQ=255)

                       ttctttAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCa                                                                     <  2:47600/91‑1 (MQ=255)

                       ttctttAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCa                                                                     >  1:2641934/1‑91 (MQ=255)

                          tttAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAg                                                                  <  1:2685144/91‑1 (MQ=255)

                          tttAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAg                                                                  <  1:1367624/91‑1 (MQ=255)

                            tAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGaa                                                                <  2:260845/91‑1 (MQ=255)

                             aGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGaaa                                                               >  1:3405449/1‑91 (MQ=255)

                              ggAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGaaaa                                                              <  2:3933128/91‑1 (MQ=255)

                               gAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAAc                                                             <  2:2107561/91‑1 (MQ=255)

                               gAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAAc                                                             >  1:3883775/1‑91 (MQ=255)

                               gAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAAc                                                             <  2:2805055/91‑1 (MQ=255)

                               aaataaataAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAAc                                                             <  2:1561167/90‑1 (MQ=255)

                                aataaataAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAAcc                                                            >  2:1236228/1‑91 (MQ=255)

                                aataaataAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAAcc                                                            >  1:1302706/1‑91 (MQ=255)

                                  taaataaaAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGt                                                          <  1:510553/91‑1 (MQ=255)

                                   aaataaaAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTa                                                         >  1:2272348/1‑91 (MQ=255)

                                   aaataaaAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTa                                                         >  1:281165/1‑91 (MQ=255)

                                    aataaaAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTAt                                                        <  2:985600/91‑1 (MQ=255)

                                    aataaaAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTAt                                                        >  1:3939035/1‑91 (MQ=255)

                                    aataaaAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTAt                                                        >  1:3395479/1‑91 (MQ=255)

                                     ataaaAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATc                                                       <  2:3166833/91‑1 (MQ=255)

                                     ataaaAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATc                                                       <  2:584899/91‑1 (MQ=255)

                                        aaaaaaCAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCAtt                                                    >  1:116548/1‑91 (MQ=255)

                                              cAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGa                                              >  2:3379393/1‑91 (MQ=255)

                                                agagATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATa                                            >  2:628546/1‑91 (MQ=255)

                                                agagATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATa                                            >  1:3462797/1‑91 (MQ=255)

                                                 gagaTAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATAc                                           >  2:1425416/1‑91 (MQ=255)

                                                 gagaTAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATAc                                           <  2:3326163/91‑1 (MQ=255)

                                                 gagaTAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATAc                                           >  1:688267/1‑91 (MQ=255)

                                                  agaTAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACg                                          >  1:606005/1‑91 (MQ=255)

                                                   gaTAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGc                                         <  2:3828713/91‑1 (MQ=255)

                                                    aTAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATATTATATTTATTCATAAATATCCTAGCAAACCGTATCATTACCCGATACGCa                                        >  2:168055/1‑91 (MQ=255)

                                                      aGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCaga                                      >  2:2296230/1‑91 (MQ=255)

                                                        gTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAgaga                                    >  1:1802146/1‑91 (MQ=255)

                                                          gCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATg                                  <  1:1683157/91‑1 (MQ=255)

                                                          gCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATg                                  <  2:2959712/91‑1 (MQ=255)

                                                           cGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAATCCGTATCATTAACCGATACGCAGAGATGc                                 <  1:2374018/91‑1 (MQ=255)

                                                           cGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGc                                 <  2:35653/91‑1 (MQ=255)

                                                           cGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGc                                 <  1:3772928/91‑1 (MQ=255)

                                                           cGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGc                                 <  1:1212704/91‑1 (MQ=255)

                                                           cGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGc                                 <  2:3108247/91‑1 (MQ=255)

                                                           cGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGc                                 <  1:1842558/91‑1 (MQ=255)

                                                           cGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGc                                 >  1:2263813/1‑91 (MQ=255)

                                                            gAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCg                                <  1:1010839/91‑1 (MQ=255)

                                                            gAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCg                                >  1:838620/1‑91 (MQ=255)

                                                            gAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCg                                <  1:3582014/91‑1 (MQ=255)

                                                             aaGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCgg                               <  2:70809/91‑1 (MQ=255)

                                                             aaGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCgg                               >  1:3088740/1‑91 (MQ=255)

                                                              aGTGTTTGGATTATACAAATGCTTCGCACctatctcttgtttttttatttattcctaaagaaagactctaaacttttaattacttttatag                              <  1:3121084‑M2/91‑63 (MQ=255)

                                                               gtgtTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGtt                             >  1:796458/1‑91 (MQ=255)

                                                                tgtTTGGATTATACAAATGCTTCGCATctatctcttgtttttttatttattcctaaagaaagactctaaacttttaattacttttttagtt                            <  1:1904759‑M2/91‑65 (MQ=255)

                                                                 gtTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGtttt                           >  2:513279/1‑91 (MQ=255)

                                                                 gtTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGtttt                           >  1:3443873/1‑91 (MQ=255)

                                                                  tttGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGGGATGCGGttttt                          <  2:642078/91‑1 (MQ=255)

                                                                  tttGGATTATACAAATGCTTCGCACctatctcttgtttttttatttattcctaaagaaagactctaaacttttaattacttttttagttcg                          <  2:2707692‑M2/91‑67 (MQ=255)

                                                                   ttGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGtttttt                         >  2:1973642/1‑91 (MQ=255)

                                                                   ttGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGtttttt                         >  1:3896542/1‑91 (MQ=255)

                                                                   ttGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGtttttt                         <  1:2199559/91‑1 (MQ=255)

                                                                    tGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTa                        <  1:396252/91‑1 (MQ=255)

                                                                    tGGATTATACAAATGCTTCGCACctatctcttgtttttttatttattcctaaagcaagactctaaacttttaattacttttttagttcgca                        <  2:2527795‑M2/91‑69 (MQ=255)

                                                                    tGGATTATACAAATGCTTCGCACctatctcttgtttttttatttattcctaaagaaagactctaaacttttaattacttttttagttcgca                        <  1:849913‑M2/91‑69 (MQ=255)

                                                                      gATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGa                      >  2:3484457/1‑91 (MQ=255)

                                                                         tataCAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAGACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGacac                   <  2:510226/91‑1 (MQ=255)

                                                                          ataCAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACt                  <  1:2720944/91‑1 (MQ=255)

                                                                           taCAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACtt                 >  1:1720144/1‑91 (MQ=255)

                                                                            aCAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACTTc                >  1:748809/1‑91 (MQ=255)

                                                                               aaTGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACTTCATa             >  1:3523888/1‑91 (MQ=255)

                                                                                    ttCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACTTCATAAAggg        >  1:1795327/1‑91 (MQ=255)

                                                                                    ttCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACTTCATAAAggg        >  1:106867/1‑91 (MQ=255)

                                                                                     tCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACTTCATAAAGGGa       >  1:2877644/1‑91 (MQ=255)

                                                                                      cGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACTTCATAAAGGGAt      >  1:3591902/1‑91 (MQ=255)

                                                                                         aTCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACTTCATAAAGGGAtttt   <  2:543270/91‑1 (MQ=255)

                                                                                          tCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACTTCATAAAGGGATTTTg  <  2:1625824/91‑1 (MQ=255)

                                                                                          tCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACTTCATAAAGGGATTTTg  <  2:1793623/91‑1 (MQ=255)

AAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACTTCATAAAGGGATTTTG  >  USA300TCH1516_ALE/54513‑54693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.