BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 54568	227 (1.110)	16 (0.080)	9/156	NT	6.7%	intergenic (+15/+609)	USA300HOU_RS00220/gloC_1	hypothetical protein/Hydroxyacylglutathione hydrolase GloC
*	?	USA300TCH1516_ALE	= 54603	221 (1.110)	16 (0.080)	9/156	NT	6.7%	intergenic (+50/+574)	USA300HOU_RS00220/gloC_1	hypothetical protein/Hydroxyacylglutathione hydrolase GloC

Only 100 of 289 total aligned reads displayed.

AGAATCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAG  >  USA300TCH1516_ALE/54478‑54658

aGAATCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAG                                                                                            <  1:154832‑M1/91‑1 (MQ=255)

 gAATCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAgg                                                                                           >  1:3558014/1‑91 (MQ=255)

 gAATCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAgg                                                                                           >  2:2730801/1‑91 (MQ=255)

   aTCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAGAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTg                                                                                         >  1:3429517/1‑91 (MQ=255)

   aTCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTg                                                                                         <  2:2024429/91‑1 (MQ=255)

    tCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGc                                                                                        <  2:3152381/91‑1 (MQ=255)

    tCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGc                                                                                        <  2:2358238/91‑1 (MQ=255)

    tCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGc                                                                                        >  2:1437129/1‑91 (MQ=255)

    tCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGc                                                                                        <  2:2507759/91‑1 (MQ=255)

    tCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAAGAAATAAAAAGACAAGACATAGGTGc                                                                                        >  2:3430120/1‑91 (MQ=255)

     cAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCg                                                                                       <  1:3019044/91‑1 (MQ=255)

       aaaGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGaa                                                                                     <  2:393661/91‑1 (MQ=255)

       aaaGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGaa                                                                                     >  2:2988877/1‑91 (MQ=255)

       aaaGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGaa                                                                                     <  2:220962/91‑1 (MQ=255)

          gaagCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAgtg                                                                                  <  1:1456992/91‑1 (MQ=255)

          gaagCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAgtg                                                                                  <  1:934176/91‑1 (MQ=255)

          gaagCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAgtg                                                                                  >  1:2696260/1‑91 (MQ=255)

           aagCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATCAATAAAAAAACAAGAGATAGGTGCGAAgggt                                                                                 >  2:563790/1‑91 (MQ=255)

           aagCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAgtgt                                                                                 >  1:662120/1‑91 (MQ=255)

            agCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGtt                                                                                >  1:3129091/1‑91 (MQ=255)

            agCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGtt                                                                                <  2:2046222/91‑1 (MQ=255)

            agCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGtt                                                                                <  1:2290673/91‑1 (MQ=255)

            agCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGtt                                                                                <  2:734669/91‑1 (MQ=255)

            agCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGtt                                                                                <  2:1594321/91‑1 (MQ=255)

             gCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGttt                                                                               <  2:1635623/91‑1 (MQ=255)

              cTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTg                                                                              >  1:3318667/1‑91 (MQ=255)

                gATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGa                                                                            >  2:1136645/1‑91 (MQ=255)

                gATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGa                                                                            >  1:1484339/1‑91 (MQ=255)

                gATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGAGCGATGTGTTTGGa                                                                            >  2:686539/1‑91 (MQ=255)

                     atTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATtata                                                                       <  2:1993538/91‑1 (MQ=255)

                     atTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATtata                                                                       <  1:691559/91‑1 (MQ=255)

                      ttGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATAc                                                                      <  2:3557797/91‑1 (MQ=255)

                      ttGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATAc                                                                      <  2:2670991/91‑1 (MQ=255)

                       tGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACa                                                                     >  1:3204791/1‑91 (MQ=255)

                       tGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACa                                                                     >  1:3230962/1‑91 (MQ=255)

                       tGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACa                                                                     >  2:1520512/1‑91 (MQ=255)

                        gcaaaCTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACaa                                                                    <  2:1423929/88‑1 (MQ=255)

                        gCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACaa                                                                    >  2:1042157/1‑91 (MQ=255)

                         cGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGgtgcgaagcatttgtataatccaaa                                                                   <  1:1776038‑M1/91‑26 (MQ=255)

                          gAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGatgcgaagcatttgtataatccaaac                                                                  <  2:1659932‑M1/91‑27 (MQ=255)

                          gAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAAt                                                                  >  1:3851802/1‑91 (MQ=255)

                          gAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAAt                                                                  <  2:8745/91‑1 (MQ=255)

                           aaCTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGatgcgaagcatttgtataatccaaaca                                                                 <  1:1904759‑M1/91‑28 (MQ=255)

                            aCTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGatgcgaagcatttgtataatccaaacac                                                                <  1:3770890‑M1/91‑29 (MQ=255)

                              tAAAAACGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTATGGATTATACAAATGcgt                                                              >  2:3872240/1‑89 (MQ=255)

                              tAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCtt                                                              <  1:786253/91‑1 (MQ=255)

                               aaaaaaGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTc                                                             >  1:3088915/1‑91 (MQ=255)

                                aaaaaGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGatgcgaagcatttgtataatccaaacacttcg                                                            <  1:2932099‑M1/91‑33 (MQ=255)

                                 aaaaGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGc                                                           >  2:1893624/1‑91 (MQ=255)

                                 aaaaGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGc                                                           >  1:1062594/1‑91 (MQ=255)

                                 aaaaGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGc                                                           >  2:829880/1‑91 (MQ=255)

                                  aaaGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCa                                                          >  1:836614/1‑91 (MQ=255)

                                  aaaGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCa                                                          <  2:1811526/91‑1 (MQ=255)

                                   aaGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCAt                                                         >  2:3077826/1‑91 (MQ=255)

                                     gTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATct                                                       <  2:3328959‑M2/91‑3 (MQ=255)

                                     gTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATct                                                       >  2:1704815‑M2/1‑89 (MQ=255)

                                         ttAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTtata                                                   >  1:1109757/1‑91 (MQ=255)

                                           aaaaGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGatgcgaagcatttgtataatccaaacacttcgcacctatctct                                                 <  1:227207‑M1/91‑44 (MQ=255)

                                           aaaaGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTAtatt                                                 >  1:2052198/1‑91 (MQ=255)

                                           aaaaGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTAtatt                                                 >  1:1040322/1‑91 (MQ=255)

                                            aaaGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGAGAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTAtattt                                                <  2:1688697/91‑1 (MQ=255)

                                               gTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGTATTATACAAATGCTTCGCATCTTAtatttatt                                             >  2:947779/1‑91 (MQ=255)

                                               gTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTAtatttatt                                             <  1:881797/91‑1 (MQ=255)

                                                  tAGAGTCTTTCTTTAGGAATAAATAAAAAAACAGGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATtaat                                          <  2:185059/91‑1 (MQ=255)

                                                  tAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATtaat                                          >  1:252454/1‑91 (MQ=255)

                                                   agagTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATtaata                                         >  2:1494508/1‑91 (MQ=255)

                                                    gagTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATtaataa                                        >  1:3182695/1‑91 (MQ=255)

                                                    gagTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATtaataa                                        >  1:159333/1‑91 (MQ=255)

                                                    gagTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATtaataa                                        <  1:1336140/91‑1 (MQ=255)

                                                    gagTCTTACTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGTATTATACAAATTTTTCGCATCTTATATTTATtaataa                                        >  2:3684724/1‑91 (MQ=255)

                                                     agTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTaataaa                                       <  2:3230664/91‑1 (MQ=255)

                                                     agTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTaataaa                                       >  2:3092082/1‑91 (MQ=255)

                                                      gTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTaataaat                                      <  1:116808/91‑1 (MQ=255)

                                                         tttctttAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATc                                   >  1:41739/1‑91 (MQ=255)

                                                          ttctttAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCa                                  <  1:2716059/91‑1 (MQ=255)

                                                             tttAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAg                               <  1:2685143/91‑1 (MQ=255)

                                                               tAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGaa                             <  2:260845/91‑1 (MQ=255)

                                                               tAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGaa                             <  2:521597/91‑1 (MQ=255)

                                                                aGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGaaa                            >  1:3405449/1‑91 (MQ=255)

                                                                 ggAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGaaaa                           <  1:96649/91‑1 (MQ=255)

                                                                  gAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAAc                          <  2:2805055/91‑1 (MQ=255)

                                                                  gAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAAc                          >  1:3883775/1‑91 (MQ=255)

                                                                  gAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAAc                          <  2:2107561/91‑1 (MQ=255)

                                                                   aataaataAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAAcc                         >  2:1236201/1‑91 (MQ=255)

                                                                   aataaataAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAAcc                         >  1:1302706/1‑91 (MQ=255)

                                                                     taaataaaAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGt                       <  2:2298229/91‑1 (MQ=255)

                                                                      aaataaaAAAACTAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTa                      <  2:3280575/91‑1 (MQ=255)

                                                                      aaataaaAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTa                      >  1:283836/1‑91 (MQ=255)

                                                                       aataaaAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTAt                     >  2:3736740/1‑91 (MQ=255)

                                                                       aataaaAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTAt                     >  1:3395479/1‑91 (MQ=255)

                                                                       aataaaAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTAt                     <  2:985600/91‑1 (MQ=255)

                                                                        ataaaAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATc                    <  2:584899/91‑1 (MQ=255)

                                                                                   agagATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATa         >  2:633139/1‑91 (MQ=255)

                                                                                    gagaTAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATAc        <  2:3326099/91‑1 (MQ=255)

                                                                                     agaTAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACg       >  1:605870/1‑91 (MQ=255)

                                                                                     agaTAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACg       <  1:2112410/91‑1 (MQ=255)

                                                                                       aTAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCa     <  1:1600845/91‑1 (MQ=255)

                                                                                         agatgcgaagcatttgtataatccaaacacttcgcacctatctcttgtttttttatttattcctaaagaaagactctaaacttttaattac   >  2:2699680‑M1/1‑2 (MQ=255)

                                                                                         agatgcgaagcatttgtataatccaaacacttcgcacctatctcttgtttttttatttattcctaaagaaagactctaaacttttaattac   >  1:2096889‑M1/1‑2 (MQ=255)

                                                                                          gatgcgaagcatttgtataatccaaacacttcgcacctatctcttgtttttttatttattcctaaagaaagactctaaacttttaattact  <  1:467911‑M1/91‑91 (MQ=255)

AGAATCAAAAGAAGCTGATATATTGCGAACTAAAAAAGTAATTAAAAGTTTAGAGTCTTTCTTTAGGAATAAATAAAAAAACAAGAGATAGGTGCGAAGTGTTTGGATTATACAAATGCTTCGCATCTTATATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAG  >  USA300TCH1516_ALE/54478‑54658

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.