| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 68500 = | NA (NA) | 7 (0.040) | 4/154 | NT | 5.0% | coding (616/852 nt) | USA300TCH1516_00061 | hypothetical protein |
| ? | USA300TCH1516_ALE | 68542 = | 138 (0.680) | coding (658/852 nt) | USA300TCH1516_00061 | hypothetical protein | |||||
GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATgcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/68589‑68500‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATT > USA300TCH1516_ALE/68542‑68634 GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATG < 1:1039223/91‑1GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATG > 2:3415199/1‑91GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATG < 1:1894258/91‑1GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATG > 2:181143/1‑91GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATG > 1:2164000/1‑91GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATG < 1:3118899/91‑1 TAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGC < 1:1192339/91‑1 TAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGC < 2:2774226/91‑1 TAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGC > 2:1248055/1‑91 TAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGC < 2:1145736/91‑1 TAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGC > 2:1088807/1‑91 TAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGC < 1:835709/91‑1 TAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGC < 1:835656/91‑1 TAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGC > 1:3196613/1‑91 AAAAAGTTTCAGTCTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCC < 2:3291113/91‑1 AAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCC < 2:3341407/91‑1 AAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCC < 1:1358203/91‑1 AAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCC < 1:2743891/91‑1 AAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCC < 2:2733520/91‑1 AAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGGGTTCCCTTTCGGGACATACTTCTGATAATGCC < 2:3881764/91‑1 AAAAAGTTTCAGACTGTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACGTCTGATAATGCC < 2:602763/91‑1 TCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTTAAACTTTTTACTTCAA > 1:857458/1‑91 TCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAA > 1:2058376/1‑91 TCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAA > 1:3458917/1‑91 CGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAAT > 2:3188638/1‑91 CGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAAT > 1:391527/1‑91 GGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATA > 2:510510/1‑91 GTTCCCTTTCGGGACATACTTCTGATAATGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGTAACTTTTTACATCAATAATGAGCT > 2:3686399/1‑91 GCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATA > 2:2030531/1‑91 GCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATA > 2:2942646/1‑91 CCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATAT > 2:1455895/1‑91 CCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATAT > 1:3486769/1‑91 CCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATAT > 1:1215680/1‑91 CCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATT < 1:516921/91‑1 GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATgcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/68589‑68500‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATT > USA300TCH1516_ALE/68542‑68634 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |