New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 68500 =NA (NA)7 (0.040) 4/154 NT 5.0% coding (616/852 nt) USA300TCH1516_00061 hypothetical protein
?USA300TCH1516_ALE 68542 = 138 (0.680)coding (658/852 nt) USA300TCH1516_00061 hypothetical protein

Only 100 of 168 total aligned reads displayed.

ATCGATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAG  >  USA300TCH1516_ALE/68410‑68574
                                                                                          |                                                                          
atcGATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCa                                                                            >  1:2866388/1‑91 (MQ=38)
 tcGATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCAt                                                                           <  2:948778/91‑1 (MQ=38)
 tcGATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCAt                                                                           <  1:2313034/91‑1 (MQ=39)
  cGATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCAtt                                                                          >  2:531367/1‑91 (MQ=37)
   gATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTa                                                                         >  2:2494859/1‑91 (MQ=38)
    atatACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTAt                                                                        >  1:1943594/1‑91 (MQ=37)
    atatACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTAt                                                                        >  1:3391943/1‑91 (MQ=39)
    atatACCTGAGAGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATAGTAAAAAGAAAAAGGCATTAt                                                                        <  2:2215999/91‑1 (MQ=11)
     tataCCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATc                                                                       >  1:749861/1‑91 (MQ=39)
     tataCCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATc                                                                       >  2:615719/1‑91 (MQ=38)
     tagaCCTGAGGGTTGTATATTACATAGTGAGCAGGTCAGCGTTTATACATCTTATGCTTATTATCAGTTGTGCGAAGAAAAAGGCATTATc                                                                       <  2:434717/88‑1 (MQ=14)
       taCCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAg                                                                     <  2:3839064/91‑1 (MQ=38)
       taCCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAg                                                                     >  2:3524620/1‑91 (MQ=38)
       taCCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAg                                                                     <  1:3901788/91‑1 (MQ=39)
       taCCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAg                                                                     <  1:2759214/91‑1 (MQ=39)
        aCCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGa                                                                    >  1:2720035/1‑91 (MQ=38)
        aCCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGa                                                                    <  1:120165/91‑1 (MQ=38)
         ccTGAGGGTTGTATATTACATAGTGATCAAGGCAGCTTTTATACATCTTATGCTTATTGTCAATTGTGCGAAGAAAAAGGCATTATCAGaa                                                                   <  2:3881402/91‑1 (MQ=255)
         ccTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGaa                                                                   >  2:394008/1‑91 (MQ=38)
          cTGAGGGTTGTATATTACATAGTGATCAACGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATGATCAGAAg                                                                  >  2:3437908/1‑91 (MQ=255)
           tGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGt                                                                 <  2:3356931/91‑1 (MQ=38)
           tGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGt                                                                 <  1:1608030/91‑1 (MQ=38)
               ggTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGt                                                             <  2:2348607/91‑1 (MQ=38)
               ggTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGt                                                             <  2:420156/91‑1 (MQ=38)
                  tGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTccc                                                          >  1:390011/1‑91 (MQ=34)
                  tGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTccc                                                          <  2:233993/91‑1 (MQ=34)
                   gTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTccct                                                         <  2:223137/91‑2 (MQ=21)
                   gTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCg                                                         >  1:3480192/1‑91 (MQ=34)
                   gTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCg                                                         >  2:3098621/1‑91 (MQ=34)
                   gTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCg                                                         >  1:3827353/1‑91 (MQ=33)
                    tataTTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGa                                                        >  2:2681236/1‑91 (MQ=34)
                    tataTTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGa                                                        >  2:2665158/1‑91 (MQ=33)
                     atatTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGaa                                                       <  2:2124863/91‑1 (MQ=34)
                     atatTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGaa                                                       <  1:1320734/91‑1 (MQ=33)
                      tatTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTccctttc                                                      <  1:3568928/91‑5 (MQ=21)
                      tatTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGaaa                                                      >  2:2942529/1‑91 (MQ=34)
                        ttACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAgg                                                    >  1:480881/1‑91 (MQ=34)
                        ttACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAgg                                                    >  1:3496070/1‑91 (MQ=34)
                        ttACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCAGAAAgg                                                    >  1:1773083/1‑91 (MQ=21)
                         tACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAggg                                                   <  2:732887/91‑1 (MQ=34)
                          aCATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGa                                                  >  2:1538961/1‑91 (MQ=34)
                           cATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGaa                                                 <  1:2351725/91‑1 (MQ=34)
                            aTAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAac                                                >  2:1600965/1‑91 (MQ=34)
                             tAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAaca                                               <  1:399181/91‑1 (MQ=34)
                             tAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAaca                                               <  1:1991066/91‑1 (MQ=34)
                               gTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACAcc                                             >  2:3346326/1‑91 (MQ=34)
                               gTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCCAAAGGGAACAcc                                             >  2:3286693/1‑91 (MQ=18)
                                      aGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGAt                                      >  1:3218352/1‑91 (MQ=34)
                                        gCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATaa                                    >  1:3325251/1‑91 (MQ=34)
                                        gCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATaa                                    <  2:3363697/91‑1 (MQ=34)
                                         cAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAAc                                   <  2:3093284/91‑1 (MQ=34)
                                         cAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAAc                                   >  1:2213362/1‑91 (MQ=34)
                                         cAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAAc                                   >  2:822042/1‑91 (MQ=33)
                                           gCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGc                                 >  2:2133061/1‑91 (MQ=34)
                                           gCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGc                                 >  1:3579939/1‑91 (MQ=34)
                                           gCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGc                                 >  1:1582661/1‑91 (MQ=34)
                                           gCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGc                                 >  2:3641845/1‑91 (MQ=34)
                                           gCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGc                                 >  2:1940014/1‑91 (MQ=33)
                                             gTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGccc                               <  1:193088/91‑1 (MQ=34)
                                             gTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGccc                               >  2:1912507/1‑91 (MQ=34)
                                               ttATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCg                             >  1:1476874/1‑91 (MQ=34)
                                                tataCATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGa                            <  2:2174114/91‑1 (MQ=34)
                                                tataCATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGa                            >  2:1878388/1‑91 (MQ=34)
                                                 ataCGTCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGAt                           <  1:3299447/91‑1 (MQ=21)
                                                 ataCATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGAt                           <  2:2232490/91‑1 (MQ=34)
                                                 ataCATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGAt                           <  2:3661551/91‑1 (MQ=34)
                                                  taCATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATa                          <  1:877244/91‑1 (MQ=34)
                                                  taCATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATa                          <  1:1380842/91‑1 (MQ=33)
                                                  taCATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATa                          <  1:2530993/91‑1 (MQ=34)
                                                  taCAGCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATa                          <  1:877297/91‑1 (MQ=18)
                                                  gaCAGCTTATGCTTAGGATCAATTGTGCGAATAAAAAGGCATTATCAGAAGGAGGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATa                          <  2:3566563/90‑1 (MQ=11)
                                                   aCATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAg                         <  2:1104628/91‑1 (MQ=34)
                                                   aCATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAg                         <  1:2182288/91‑1 (MQ=34)
                                                   aCATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAg                         >  2:2611641/1‑91 (MQ=33)
                                                    cgtCTTTTGCTTATTATCCATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATATCGCCCCGTTAGa                        <  2:1963324/89‑1 (MQ=11)
                                                    cATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGa                        <  1:1306672/91‑1 (MQ=34)
                                                    cATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGa                        <  2:1741353/91‑1 (MQ=34)
                                                    cATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGa                        <  1:3416299/91‑1 (MQ=34)
                                                    cATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGa                        <  1:1888344/91‑1 (MQ=33)
                                                          aTGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGttt                  <  1:968853/91‑1 (MQ=33)
                                                          aTGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGttt                  >  1:616905/1‑91 (MQ=34)
                                                           tGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTc                 <  1:2432365/91‑1 (MQ=34)
                                                           tGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTc                 <  2:129281/91‑1 (MQ=34)
                                                            gCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTcc                <  1:2526143/91‑1 (MQ=34)
                                                            gCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTcc                <  1:320850/91‑1 (MQ=34)
                                                            gCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTcc                >  1:888443/1‑91 (MQ=34)
                                                            gCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGAGAACACCTGCCGATAACGCCCCGATAGAAAGTTTcc                >  2:3900726/1‑91 (MQ=21)
                                                                attatCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTc            <  1:2359820/91‑1 (MQ=34)
                                                                 ttatCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTcc           >  1:1068497/1‑91 (MQ=34)
                                                                  tatCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCt          <  2:1081026/91‑1 (MQ=34)
                                                                  tatCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCt          <  2:1228862/91‑1 (MQ=33)
                                                                  tatCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCt          <  1:2047127/91‑1 (MQ=33)
                                                                  tatCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCt          <  2:1978102/91‑1 (MQ=33)
                                                                   gtCAATGGGGCGAAGAAAGAGGCATCATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGGTAGAAAGTTTCCATTCCTc         <  2:2438159/90‑1 (MQ=11)
                                                                   atCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTc         <  1:3249622/91‑1 (MQ=34)
                                                                    tCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCg        >  1:2229579/1‑91 (MQ=34)
                                                                      aaTTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCt      <  1:2713528/91‑1 (MQ=34)
                                                                      aaTTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCt      >  1:2638655/1‑91 (MQ=34)
                                                                         tgtgCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTaaa   >  2:1298744/1‑91 (MQ=32)
                                                                          gtgCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAg  >  2:1592252/1‑91 (MQ=31)
                                                                                          |                                                                          
ATCGATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAG  >  USA300TCH1516_ALE/68410‑68574

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.