| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 161003 = | 188 (0.920) | 22 (0.140) | 8/124 | NT | 15.1% | intergenic (+17/+114) | deoB/phnE_1 | Phosphopentomutase/Phosphate‑import permease protein PhnE |
| ? | USA300TCH1516_ALE | 161059 = | 102 (0.650) | intergenic (+73/+58) | deoB/phnE_1 | Phosphopentomutase/Phosphate‑import permease protein PhnE | |||||
ATCAGGATACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/161110‑161003‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcactgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGAAA > USA300TCH1516_ALE/161059‑161148 ATCAGGATACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAAC < 1:3916009/91‑1 TCAGGATACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACT < 2:2963371/91‑1 CAGGATACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTT < 2:1337543/91‑1 CAGGATACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTT < 2:1337948/91‑1 CAGGATACGCCTAAATAATAAGTCCTGCGGTGTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTAGAGTTAACTT < 2:161478/91‑1 AGGATACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTC > 1:2157757/1‑91 AGGATACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTC < 2:3932736/91‑1 GGATACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCA < 1:1713340/91‑1 GATACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCAC < 2:1652878/91‑1 GATACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCAC < 1:1950092/91‑1 GATACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCAC < 2:2021789/91‑1 ATACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACT < 1:1965027/91‑1 ATACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACT < 1:1308204/91‑1 TACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACTG > 1:1088040/1‑91 tCTCCTAAATAAGAAGTTCTACCGTCTTACGTTTCTCTATTATAATAAAATCAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACTGC < 2:24598/90‑1 ACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACTGC > 1:1006162/1‑91 ACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACTGC < 1:848005/91‑1 ACTCCTAAATAAGAAGTCCTACCGTCTTACGTTGCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACTGC < 1:3500825/91‑1 CTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACTGCT > 2:125941/1‑91 CTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACTGCT < 2:3089774/91‑1 CTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACTGCT > 2:2080419/1‑91 CCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACTGCTGT < 1:1835868/91‑1 CTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACTGCTGTT < 1:2468636/91‑1 AAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACTGCTGTTTT < 2:3150243/91‑1 TAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTAT > 2:1767550/1‑91 CAGTGAAGAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTA > 2:619338/1‑91 GTGAAGAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATC > 1:144644/1‑91 GTGAAGAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATC > 1:144618/1‑91 GTGAAGAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATC > 1:706151/1‑91 TGAAGAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCC > 2:2676335/1‑91 TGAAGAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCC > 1:1645097/1‑91 TGAAGAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAACACGGTAGGACTTCTTATTTAGGAGTATCC > 1:3173561/1‑91 GAAGAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCT > 2:212387/1‑91 GAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGCCTTCTTATTTAGGCGTATCCTGAT > 2:2251985/1‑91 GAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGct > 2:2473027/1‑89 GAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAT > 2:37882/1‑91 GAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAT > 2:2083096/1‑91 GAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAT > 1:233026/1‑91 GAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAT > 1:93482/1‑91 GAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAT > 1:72966/1‑91 GAAAACGATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAT > 1:3078727/1‑91 AAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATT > 2:3160136/1‑91 AAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTT > 2:479643/1‑91 AAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTT > 2:30673/1‑91 AAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTT > 1:64445/1‑91 AAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATAATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTT > 1:2744013/1‑91 ACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAA > 1:2883665/1‑91 CTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTT > 2:2190059/1‑91 CTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTT > 2:3393855/1‑91 CTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTT > 1:1112624/1‑91 TTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTT < 2:2136513/91‑1 TTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTT < 1:1523476/91‑1 TCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTC < 1:2349773/91‑1 TCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTC < 1:2349412/91‑1 TCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTC < 1:3167519/91‑1 ACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGG < 1:1272903/91‑1 ACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGG < 2:2549315/91‑1 CTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGA > 2:2938212/1‑91 CTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGA > 2:2938126/1‑91 CTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGA > 1:340056/1‑91 TGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGAT < 1:236558/91‑1 GCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATT < 2:2100724/91‑1 GCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATT < 1:996949/91‑1 GCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATT > 2:2649832/1‑91 CTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTG < 2:898433/91‑1 TGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGA < 2:1319706/91‑1 GTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAA < 2:1614756/91‑1 GTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAA < 1:587575/91‑1 TTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAAC < 2:1440310/91‑1 TTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAAC < 2:1440297/91‑1 TTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAAC < 2:601482/91‑1 TTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCG > 1:1617687/1‑91 TTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCG < 1:1015116/91‑1 TTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGG < 1:548257/91‑1 TATTATAATAGAGAAGCGTAAGGCGGTAGGACTTCTTGTTTAGGAGTAGCCTGATTTAATGTTGAACAATACGTTTTCGGATTGAACCGGA < 2:497373/91‑1 TATTATAATAGAGAAACGTAAGACGGTCGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGCACCGGA > 2:2439900/1‑91 TATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGA > 1:3267161/1‑91 TATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGA > 2:3944437/1‑91 ATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGAA > 2:378872/1‑91 TTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGAAA < 2:2374242/91‑1 TTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGAAA < 1:3186540/91‑1 TTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGAAA < 1:3186525/91‑1 ATCAGGATACTCCTAAATAAGAAGTCCTACCGTCTTACGTTTCTCTATTATAATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/161110‑161003‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcactgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGAAA > USA300TCH1516_ALE/161059‑161148 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |