BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	161003 =	188 (0.920)	22 (0.140)	8/124	NT	15.1%	intergenic (+17/+114)	deoB/phnE_1	Phosphopentomutase/Phosphate‑import permease protein PhnE
*	?	USA300TCH1516_ALE	161059 =	102 (0.650)	22 (0.140)	8/124	NT	15.1%	intergenic (+73/+58)	deoB/phnE_1	Phosphopentomutase/Phosphate‑import permease protein PhnE

Only 100 of 276 total aligned reads displayed.

GTGCAACTATAGCAGATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTA  >  USA300TCH1516_ALE/160913‑161093

tttccggttcaatccgaaaacgtattgtttaacattaaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataa                                                                                            <  1:3186525‑M1/1‑1 (MQ=255)

  tccggttcaatccgaaaacgtattgtttaacattaaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataata                                                                                          >  1:3267161‑M1/89‑91 (MQ=255)

   ccggttcaatccgaaaacgtattgtttaacattaaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataataa                                                                                         <  1:548257‑M1/4‑1 (MQ=255)

   cAACTATAGCAGATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATaa                                                                                         <  2:3335806/91‑1 (MQ=255)

   cAACTATAGCAGATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATaa                                                                                         <  2:1422389/91‑1 (MQ=255)

    cggttcaatccgaaaacgtattgtttaacattaaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATaaa                                                                                        >  1:1617687‑M1/87‑91 (MQ=255)

    aaCTATAGCAGATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATaaa                                                                                        >  2:565443/1‑91 (MQ=255)

     aCTATAGCAGATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATaaaa                                                                                       >  1:316757/1‑91 (MQ=255)

     aCTATAGCAGATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATaaaa                                                                                       >  1:316470/1‑91 (MQ=255)

     aCTATAGCAGATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATaaaa                                                                                       <  2:3172602/91‑1 (MQ=255)

     aCTATAGCAGATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATaaaa                                                                                       <  2:1305882/91‑1 (MQ=255)

      gttcaatccgaaaacgtattgtttaacattaaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATaaaaa                                                                                      <  2:1440310‑M1/7‑1 (MQ=255)

      cTATAGCAGATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATaaaaa                                                                                      >  2:1288383/1‑91 (MQ=255)

       ttcaatccgaaaacgtattgtttaacattaaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATAAAAAc                                                                                     <  2:1614756‑M1/8‑1 (MQ=255)

       tataGCAGATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAAc                                                                                     <  1:1969955/91‑1 (MQ=255)

       tataGCAGATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAAc                                                                                     <  2:3163201/91‑1 (MQ=255)

         taGCAGATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAAcag                                                                                   >  2:3157348/1‑91 (MQ=255)

         caatccgaaaacgtattgtttaacattaaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATAAAAAcag                                                                                   <  2:898433‑M1/10‑1 (MQ=255)

          aatccgaaaacgtattgtttaacattaaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATAAAAAcagc                                                                                  <  1:996949‑M1/11‑1 (MQ=255)

          aGCAGATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAAcagc                                                                                  >  1:2123125/1‑91 (MQ=255)

            tccgaaaacgtattgtttaacattaaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATAAAAAcagcag                                                                                >  2:2938126‑M1/79‑91 (MQ=255)

            cAGATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAAcagcag                                                                                <  2:2635326/91‑1 (MQ=255)

            cAGATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGATATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAAcagcag                                                                                >  2:3678779/1‑91 (MQ=255)

             ccgaaaacgtattgtttaacattaaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATAAAAACAGCAGt                                                                               <  1:1272903‑M1/14‑1 (MQ=255)

              gATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTg                                                                              <  1:3872414/91‑1 (MQ=255)

              gATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTg                                                                              <  2:667335/91‑1 (MQ=255)

               gaaaacgtattgtttaacattaaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATAAAAACAGCAGTGa                                                                             <  1:2349412‑M1/16‑1 (MQ=255)

                tAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGaa                                                                            >  2:1847349/1‑91 (MQ=255)

                aaaacgtattgtttaacattaaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATAAAAACAGCAGTGaa                                                                            <  2:2136513‑M1/17‑1 (MQ=255)

                 aaacgtattgtttaacattaaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATAAAAACAGCAGTGAAg                                                                           >  1:1112624‑M1/74‑91 (MQ=255)

                 aaTTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAg                                                                           <  1:53086/91‑1 (MQ=255)

                  aTTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGt                                                                          >  2:2166735/1‑91 (MQ=255)

                  aTTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGt                                                                          <  1:1848847/91‑1 (MQ=255)

                  aTTTCAAAGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGt                                                                          <  2:2369183/91‑1 (MQ=255)

                     tCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTaa                                                                       <  1:855905/91‑1 (MQ=255)

                     tCAACGTAACATTACCAGAGCTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATCATAAAAACAGCAGCGAAGTTaa                                                                       >  2:2271077/1‑91 (MQ=255)

                      cAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAAc                                                                      >  2:3817433/1‑91 (MQ=255)

                      cAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAAc                                                                      <  2:1259223/91‑1 (MQ=255)

                       aaCGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACt                                                                     <  1:3224831/91‑1 (MQ=255)

                       aaCGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACt                                                                     >  1:3662674/1‑91 (MQ=255)

                        aCGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACta                                                                    >  2:622971/1‑91 (MQ=255)

                         cGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGGATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACtat                                                                   <  1:3426788/91‑1 (MQ=255)

                          gTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACtata                                                                  >  2:2094082/1‑91 (MQ=255)

                          gTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACtata                                                                  >  2:3588403/1‑91 (MQ=255)

                          gTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGAAAACtatt                                                                  <  1:1014965/91‑2 (MQ=255)

                            aaCATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAAc                                                                <  1:403889/91‑1 (MQ=255)

                            aaCATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAAc                                                                >  1:2128562/1‑91 (MQ=255)

                            aaCATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAAc                                                                <  1:1686873/91‑1 (MQ=255)

                            aaCATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAAc                                                                >  1:3759461/1‑91 (MQ=255)

                             aCATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACa                                                               >  1:2404231/1‑91 (MQ=255)

                             aCATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACa                                                               >  1:684148/1‑91 (MQ=255)

                              cATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACaa                                                              <  2:2029189/91‑1 (MQ=255)

                                ttACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATa                                                            >  1:2508541/1‑91 (MQ=255)

                                ttACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATa                                                            <  2:1377803/91‑1 (MQ=255)

                                ttACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATa                                                            >  2:1512253/1‑91 (MQ=255)

                                 tACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAg                                                           <  2:2291018/91‑1 (MQ=255)

                                 tACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAg                                                           >  1:651372/1‑91 (MQ=255)

                                  ttaaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATAAAAACAGCAGTGAAGTTAACTATAACAATAGt                                                          >  1:2883665‑M1/57‑91 (MQ=255)

                                  aCCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAATTAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGt                                                          <  2:3904671/91‑1 (MQ=255)

                                  aCCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGt                                                          <  1:1769179/91‑1 (MQ=255)

                                    cAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGttt                                                        <  1:3934432/91‑1 (MQ=255)

                                    aaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattattATAAAAACAGCAGTGAAGTTAACTATAACAATAGttt                                                        >  1:2744013‑M1/55‑91 (MQ=255)

                                    aaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATAAAAACAGCAGTGAAGTTAACTATAACAATAGttt                                                        >  2:479643‑M1/55‑91 (MQ=255)

                                    aaatcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATAAAAACAGCAGTGAAGTTAACTATAACAATAGttt                                                        >  2:30673‑M1/55‑91 (MQ=255)

                                      gagTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTttc                                                      >  1:2195658/1‑91 (MQ=255)

                                      atcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTttc                                                      >  1:93482‑M1/53‑91 (MQ=255)

                                      atcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTttc                                                      >  1:72966‑M1/53‑91 (MQ=255)

                                      atcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTttc                                                      >  2:37882‑M1/53‑91 (MQ=255)

                                      atcaggatacgcctaaataagaaggcctaccgtcttacgtttctctattataATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTttc                                                      >  2:2251985‑M1/53‑91 (MQ=255)

                                      agcaggatactcctaaataagaagtcctaccgtcttacgtttctctattataATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTttc                                                      >  2:2473027‑M1/53‑91 (MQ=255)

                                          ggatactcctaaataagaagtcctaccgtcttacgtttctctattataATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCa                                                  >  2:2676335‑M1/49‑91 (MQ=255)

                                           cGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCAc                                                 >  1:1017917/1‑91 (MQ=255)

                                               aaaaGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCActgct                                             <  1:491057/91‑1 (MQ=255)

                                                aaaGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCActgctg                                            <  1:768204/91‑1 (MQ=255)

                                                  aGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGtt                                          <  2:2051759/91‑1 (MQ=255)

                                                  aGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGtt                                          >  2:338555/1‑91 (MQ=255)

                                                     tATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGttttt                                       <  2:781375/91‑1 (MQ=255)

                                                     tATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGttttt                                       >  1:615102/1‑91 (MQ=255)

                                                     tATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGttttt                                       >  2:1335029/1‑91 (MQ=255)

                                                          aaaGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTtattat                                  >  2:3454398/1‑91 (MQ=255)

                                                                 ttGAAATAGAATAAATATAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTATCTTCAATACTGAATATATTATAATagag                           >  2:2410924/1‑91 (MQ=255)

                                                                   gAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGaa                         <  2:3309087/91‑1 (MQ=255)

                                                                   gAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGCTTCTATTATAATagagca                         >  2:1968497/1‑89 (MQ=255)

                                                                    aaaTAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGCTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGaaa                        >  2:3255825/1‑91 (MQ=255)

                                                                      aTAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACg                      >  1:153739/1‑91 (MQ=255)

                                                                       tAGAAGAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGt                     <  2:1076372/91‑1 (MQ=255)

                                                                        aGAATAAATTTGGATATTATAAATACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTTACTGCTGTTTTTATTATAATAGAGAAACGTa                    <  2:3015709/91‑1 (MQ=255)

                                                                             aaaTTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACg               <  2:704373/91‑1 (MQ=255)

                                                                             aaaTTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACg               >  2:1575941/1‑91 (MQ=255)

                                                                              aaTTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACgg              >  1:2657725/1‑91 (MQ=255)

                                                                                tttAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTa            >  2:397105/1‑91 (MQ=255)

                                                                                   aGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGa         >  1:3599571/1‑91 (MQ=255)

                                                                                   aGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGa         >  1:2450447/1‑91 (MQ=255)

                                                                                    gATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGAc        <  1:3000885/91‑1 (MQ=255)

                                                                                      tattatAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGActt      <  1:3263611/91‑1 (MQ=255)

                                                                                       attatAAAAACAGCAGTGAAGTTAACTATAGCAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGActtc     <  2:1781376/91‑1 (MQ=255)

                                                                                       attatAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGActtc     <  1:2833151/91‑1 (MQ=255)

                                                                                        ttatAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGActtct    <  1:1519574/91‑1 (MQ=255)

                                                                                        ttatAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGActtct    <  1:1493580/91‑1 (MQ=255)

                                                                                        ttatAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGActtct    <  1:2727844/91‑1 (MQ=255)

GTGCAACTATAGCAGATAATTTCAACGTAACATTACCAGAGTTCGGTAAAAGTTATTTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTA  >  USA300TCH1516_ALE/160913‑161093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.