| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 194938 = | 206 (1.010) | 16 (0.090) | 8/146 | NT | 8.1% | intergenic (+14/+48) | czcD_1/USA300HOU_RS00900 | Cadmium, cobalt and zinc/H(+)‑K(+) antiporter/hypothetical protein |
| ? | USA300TCH1516_ALE | 194970 = | 174 (0.940) | intergenic (+46/+16) | czcD_1/USA300HOU_RS00900 | Cadmium, cobalt and zinc/H(+)‑K(+) antiporter/hypothetical protein | |||||
AGATAGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/195034‑194938‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taggcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGGTT > USA300TCH1516_ALE/194970‑195059 AGATAGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTT > 2:1338020/1‑91AGATAGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTT > 2:3411563/1‑91AGATAGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTT > 1:2634427/1‑91AGATAGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTT > 1:1695618/1‑91AGATAGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTT < 1:252432/91‑1 GATAGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTA > 1:522060/1‑91 GATAGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTA > 1:2682177/1‑91 GATAGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTA > 2:2132871/1‑91 ATAGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTAG > 2:936048/1‑91 TAGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTAGG > 1:1872597/1‑91 TAGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTAGG > 1:210669/1‑91 AGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTAGGC < 1:949160/91‑1 AGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTAGGC < 1:1865566/91‑1 AGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTAGGC > 2:3631288/1‑91 AGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTAGGC > 2:2453667/1‑91 GCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTAGGCG > 2:283611/1‑91 GCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTAGGCG > 2:2952610/1‑91 GCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTAGGCG > 1:3528562/1‑91 aATCAAAGAAATTGACGAGAATCATTTAACTGATGCAACATAAGTATAAAAAGAAACGTGCGCCTATGACATAGATTAATGTTTTAGGCGC < 2:822657/90‑1 CATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTAGGCGC < 2:3317718/91‑1 CATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTAGGCGC < 2:2744763/91‑1 TTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTAGGCGCACGTTTCGTTTTATACTTATGTTGC > 2:1536701/1‑91 GCGCCTATGACATAGATTAATGTTTTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATG > 2:3012621/1‑91 GCCTATGACATAGATTAATGTTTTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCT > 1:784639/1‑91 GCCTATGACATAGATTAATGTTTTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCT > 1:784647/1‑91 ATGACATAGATTAATGTTTTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCT > 1:3460711/1‑91 ATGACATAGATTAATGTTTTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCT > 1:3462436/1‑91 TGACATAGATTAATGTTTTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTA > 1:753787/1‑91 TGACATAGATTAATGTTTTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTA > 1:2241938/1‑91 TGACATAGATTAATGTTTTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTA > 1:753612/1‑91 TGACATAGATTAATGTTTTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTA > 2:659538/1‑91 TGACATAGATTAATGTTTTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTA > 2:1586599/1‑91 TGACATAGATTAATGTTTTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTA > 1:1044880/1‑91 TGACATAGATTAATGTTTTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATATCTTTGATGCTATCTA > 2:3032572/1‑91 GACATAGATTAATGTTTTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTAC > 1:1541452/1‑91 ACATAGATTAATGTTTTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACA > 1:1243727/1‑91 AGATTAATGTTTTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTA > 1:950935/1‑91 TAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTT > 1:1400429/1‑91 TAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTT > 2:1049200/1‑91 TAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTT < 1:778314/91‑1 AGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTT < 2:1728711/91‑1 AGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTT < 2:1741991/91‑1 AGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTT < 2:573551/91‑1 AGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTT < 2:572858/91‑1 GGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGTTGCTATCTACATCTAACACGACATCTTTA < 2:3255362/91‑1 GGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTA < 2:1196564/91‑1 GGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTA < 1:1449583/91‑1 GGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTA < 1:2552094/91‑1 GGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTA < 1:3259539/91‑1 GGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTA < 1:3920606/91‑1 GGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTA < 2:1196928/91‑1 GCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAG < 2:305011/91‑1 GCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAG > 2:385106/1‑91 GCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAG > 2:385296/1‑91 GCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAG < 1:2004388/91‑1 CGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGG < 2:1798333/91‑1 CGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATGTTCGGCAATTTCTTTGATGCTATCTACATCGAACACGACATCTTTAtg < 2:3901042/91‑3 GCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGGT < 1:3732272/91‑1 GCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGGT > 2:316084/1‑91 GCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGGT < 1:3732271/91‑1 GCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGGT < 1:834338/91‑1 GCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGGT < 2:1775014/91‑1 CACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGGTT > 2:3014211/1‑91 CACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGGTT < 1:675234/91‑1 AGATAGCATCAAAGAAATTGACGAAAATCATTTAAATGATGCAACATAAGTATAAAACGAAACGTGCGCCTATGACATAGATTAATGTTTTAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/195034‑194938‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taggcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGGTT > USA300TCH1516_ALE/194970‑195059 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |