| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 194938 = | 206 (1.010) | 16 (0.090) | 8/146 | NT | 8.1% | intergenic (+14/+48) | czcD_1/USA300HOU_RS00900 | Cadmium, cobalt and zinc/H(+)‑K(+) antiporter/hypothetical protein |
| ? | USA300TCH1516_ALE | 194970 = | 174 (0.940) | intergenic (+46/+16) | czcD_1/USA300HOU_RS00900 | Cadmium, cobalt and zinc/H(+)‑K(+) antiporter/hypothetical protein | |||||
Only 100 of 280 total aligned reads displayed.
TTGCACATTCAACGTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATG > USA300TCH1516_ALE/194848‑195028 | ttGCACATTCAACGTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAg > 1:790348/1‑91 (MQ=255)aacctaaagatgtcgtgttagatgtagatagcatcaaagaaattgacgaaaatcatttaaatgatgcaacataagtataaaacgaaacgtg > 2:3014211‑M1/91‑91 (MQ=255) acctaaagatgtcgtgttagatgtagatagcatcaaagaaattgacgaaaatcatttaaatgatgcaacataagtataaaacgaaacgtgc < 1:3732271‑M1/2‑1 (MQ=255) acctaaagatgtcgtgttagatgtagatagcatcaaagaaattgacgaaaatcatttaaatgatgcaacataagtataaaacgaaacgtgc < 2:1775014‑M1/2‑1 (MQ=255) acctaaagatgtcgtgttagatgtagatagcatcaaagaaattgacgaaaatcatttaaatgatgcaacataagtataaaacgaaacgtgc > 2:316084‑M1/90‑91 (MQ=255) gCACATTCAACGTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAgcg < 1:3552901/91‑1 (MQ=255) cctaaagatgtcgtgttagatgtagatagcatcaaagaaattgacgaaaatcatttaaatgatgcaacataagtataaaacgaaacgtgcg < 2:1798333‑M1/3‑1 (MQ=255) cacaTTCAACGTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAgcgc < 1:959640/91‑1 (MQ=255) taaagatgtcgtgttagatgtagatagcatcaaagaaattgacgaaaatcatttaaatgatgcaacataagtataaaacgaaacgtGCGcc < 1:1449583‑M1/5‑1 (MQ=255) taaagatgtcgtgttagatgtagatagcatcaaagaaattgacgaaaatcatttaaatgatgcaacataagtataaaacgaaacgtGCGcc < 1:3259539‑M1/5‑1 (MQ=255) taaagatgtcgtgttagatgtagatagcatcaaagaaattgacgaaaatcatttaaatgatgcaacataagtataaaacgaaacgtGCGcc < 2:1196928‑M1/5‑1 (MQ=255) taTTAAACGTTGCAAATTGATAACTTGCATTTTAACCCATTAGATGAGCCATACCTCGACAATTTATCATAAATAATTCTTTGTAGGGCCt < 2:1524759/90‑1 (MQ=255) caTTCAACGTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCt < 1:1643225/91‑1 (MQ=255) aaagatgtcgtgttagatgtagatagcatcaaagaaattgacgaaaatcatttaaatgatgcaacataagtataaaacgaaacgtGCGCCt < 2:1741991‑M1/6‑1 (MQ=255) aaagatgtcgtgttagatgtagatagcatcaaagaaattgacgaaaatcatttaaatgatgcaacataagtataaaacgaaacgtGCGCCt < 2:573551‑M1/6‑1 (MQ=255) aagatgtcgtgttagatgtagatagcatcaaagaaattgacgaaaatcatttaaatgatgcaacataagtataaaacgaaacgtGCGCCTa < 1:778314‑M1/7‑1 (MQ=255) aagatgtcgtgttagatgtagatagcatcaaagaaattgacgaaaatcatttaaatgatgcaacataagtataaaacgaaacgtGCGCCTa > 1:1400429‑M1/85‑91 (MQ=255) aTTCAACGTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTa > 1:2872850/1‑91 (MQ=255) aTTCAACGTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTa > 2:676362/1‑91 (MQ=255) tCAACGTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTaaa > 2:2562554/1‑91 (MQ=255) cAACGTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTaaaa < 1:1941547/91‑1 (MQ=255) cAACGTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTaaaa < 1:304951/91‑1 (MQ=255) aaCGTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAAc < 2:1603879/91‑1 (MQ=255) aCGTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACa < 1:2225636/91‑1 (MQ=255) aCGTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACa < 2:485456/91‑1 (MQ=255) cgctGCAAATTGAAAACTTGTAATTGAATCCATTAGATGAGCCATACTTCGGCAAATTAACATAAATAAAACATTGTAGCGCCTAAAACAt > 2:3399031/4‑91 (MQ=255) cGTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACAt > 1:2082561/1‑91 (MQ=255) cGTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACAt < 1:3849194/91‑1 (MQ=255) gTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACAtt > 2:3864145/1‑91 (MQ=255) ttGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTa > 1:763548/1‑91 (MQ=255) gCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAAt < 2:1355171/91‑1 (MQ=255) aTTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTAt > 1:912239/1‑91 (MQ=255) ttGAAAACTTGCAATTGAATCCGTTAGATGAGCCATACTTCGACAAATTCACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATg < 2:3005295/91‑1 (MQ=255) tGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGt < 2:1807903/91‑1 (MQ=255) tagatagcatcaaagaaattgacgaaaatcatttaaatgatgcaacataagtataaaacgaaacgtGCGCCTAAAACATTAATCTATGTCa > 2:1586599‑M1/67‑91 (MQ=255) tagatagcatcaaagaaattgacgaaaatcatttaaatgatgcaacataagtataaaacgaaacgtGCGCCTAAAACATTAATCTATGTCa > 1:1044880‑M1/67‑91 (MQ=255) agatagcatcaaagaaattgacgaaaatcatttaaatgatgcaacataagtataaaacgaaacgtGCGCCTAAAACATTAATCTATGTCAt > 1:3462436‑M1/66‑91 (MQ=255) aaaCTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCAt > 2:1598485/1‑91 (MQ=255) aaaCTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCAt > 2:2828305/1‑91 (MQ=255) aaCTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATa > 2:2978382/1‑91 (MQ=255) aCTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAg > 2:490621/1‑91 (MQ=255) aCTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAg > 2:1867582/1‑91 (MQ=255) cTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAgg > 1:3945114/1‑91 (MQ=255) cTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAgg > 2:403723/1‑91 (MQ=255) ttGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGgc < 1:746556/91‑1 (MQ=255) ttGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGgc < 1:488967/91‑1 (MQ=255) ttGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGgc > 1:994139/1‑91 (MQ=255) gCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGgcgc < 2:3545409/91‑1 (MQ=255) gCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGgcgc > 1:171555/1‑91 (MQ=255) cAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCa > 2:1397891/1‑91 (MQ=255) aaTTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCAc > 1:1862174/1‑91 (MQ=255) aTTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCAcg < 2:887472/91‑1 (MQ=255) ttGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCAcgt < 1:68127/91‑1 (MQ=255) aaTCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCAcgtttc < 2:304475/91‑1 (MQ=255) ccATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCAcgtttcgtt < 2:626041/91‑1 (MQ=255) aTTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGtttt < 2:3101966/91‑1 (MQ=255) ttAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTta > 2:972810/1‑91 (MQ=255) ttAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTta > 1:1819540/1‑91 (MQ=255) ttAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTta > 1:1699532/1‑91 (MQ=255) tAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTtat < 2:2769036/91‑1 (MQ=255) gATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATAc > 1:3650418/1‑91 (MQ=255) gATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATAc > 2:2492672/1‑91 (MQ=255) gCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGCTTTCTACTTATg > 2:3650856/1‑91 (MQ=255) cATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGtt < 1:3202796/91‑1 (MQ=255) aTACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTg > 1:2307295/1‑91 (MQ=255) tACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGc > 2:2383906/1‑91 (MQ=255) cGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTCATGTTGcatcat > 1:1508236/1‑91 (MQ=255) gACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCAtt < 2:937540/91‑1 (MQ=255) aCAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCAttt > 2:2285514/1‑91 (MQ=255) aCAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCAttt < 1:1371482/91‑1 (MQ=255) aCAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCAttt < 1:3107133/91‑1 (MQ=255) aaTTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTaaa < 2:2177692/91‑1 (MQ=255) aaTTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTaaa < 1:1271718/91‑1 (MQ=255) ttAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATg > 2:2222605/1‑91 (MQ=255) ttAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATg > 2:2221924/1‑91 (MQ=255) ttAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATg > 2:3269659/1‑91 (MQ=255) aCATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGAtt > 2:2640397/1‑91 (MQ=255) aCATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGAtt < 1:1133713/91‑1 (MQ=255) cATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGAttt > 2:3830006/1‑91 (MQ=255) taaataaaACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTc > 2:50653/1‑91 (MQ=255) aataaaACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGt < 1:2557639/91‑1 (MQ=255) aataaaACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGt < 2:348357/91‑1 (MQ=255) ataaaACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTc < 1:1922640/91‑1 (MQ=255) ataaaACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTc < 2:1669315/91‑1 (MQ=255) taaaACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCa < 2:3729258/91‑1 (MQ=255) aaaaCATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCaa < 1:1888637/91‑1 (MQ=255) aaaaCATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCaa > 1:1627108/1‑91 (MQ=255) aaaaCATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCaa < 1:3913378/91‑1 (MQ=255) aaaCATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAAt < 1:2352058/91‑1 (MQ=255) aaCATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAAtt < 1:520194/91‑1 (MQ=255) aCATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAAttt > 1:2903212/1‑91 (MQ=255) aTTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCt < 2:1143978/91‑1 (MQ=255) ttGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCtt < 1:317372/91‑1 (MQ=255) ttGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCtt > 1:853345/1‑91 (MQ=255) ttGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCtt > 2:1231818/1‑91 (MQ=255) tGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCttt > 1:2469139/1‑91 (MQ=255) tGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCttt < 1:3435643/91‑1 (MQ=255) tGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCttt > 1:1556817/1‑91 (MQ=255) aGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGAt > 2:73020/1‑91 (MQ=255) GCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATg < 2:3317718‑M1/91‑1 (MQ=255) | TTGCACATTCAACGTTGCAAATTGAAAACTTGCAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATG > USA300TCH1516_ALE/194848‑195028 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |