BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	194938 =	206 (1.010)	16 (0.090)	8/146	NT	8.1%	intergenic (+14/+48)	czcD_1/USA300HOU_RS00900	Cadmium, cobalt and zinc/H(+)‑K(+) antiporter/hypothetical protein
*	?	USA300TCH1516_ALE	194970 =	174 (0.940)	16 (0.090)	8/146	NT	8.1%	intergenic (+46/+16)	czcD_1/USA300HOU_RS00900	Cadmium, cobalt and zinc/H(+)‑K(+) antiporter/hypothetical protein

Only 100 of 274 total aligned reads displayed.

CAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGGTTT  >  USA300TCH1516_ALE/194880‑195060

cAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCa                                                                                            >  2:1397891/1‑91 (MQ=255)

 aaTTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCAc                                                                                           >  2:2413563/1‑91 (MQ=255)

  aTTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCAcg                                                                                          <  2:887472/91‑1 (MQ=255)

    tGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCAcgtt                                                                                        <  1:721424/91‑1 (MQ=255)

    tGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCAcgtt                                                                                        <  2:580331/91‑1 (MQ=255)

     gAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCAcgttt                                                                                       <  2:2754012/91‑1 (MQ=255)

      aaTCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCAcgtttc                                                                                      <  2:1493616/91‑1 (MQ=255)

       aTCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCAcgtttcg                                                                                     <  1:1322309/91‑1 (MQ=255)

        tCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCAcgtttcgt                                                                                    <  2:2990372/91‑1 (MQ=255)

            ttAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTta                                                                                >  1:1819540/1‑91 (MQ=255)

             tAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTtat                                                                               <  2:3127140/91‑1 (MQ=255)

              aGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTtata                                                                              >  1:3769073/1‑91 (MQ=255)

              aGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTtata                                                                              >  2:163142/1‑91 (MQ=255)

               gATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATAc                                                                             >  1:3650418/1‑91 (MQ=255)

               gATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATAc                                                                             >  2:2492672/1‑91 (MQ=255)

                aTGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACt                                                                            >  1:1437502/1‑91 (MQ=255)

                 tGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCAAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACtt                                                                           >  2:3547585/1‑91 (MQ=255)

                  gAGCCCTACTTCGACAAATTAACCTACATAAAACATTATTGCGCGTAAAACTTTAATCTATGTCCTAGGCGCACGATTCGTGCTATACTTa                                                                          >  2:1374093/1‑91 (MQ=255)

                    gCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGCTTTCTACTTATg                                                                        >  2:3650856/1‑91 (MQ=255)

                      cATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGtt                                                                      <  1:3202796/91‑1 (MQ=255)

                         aCTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGca                                                                   <  1:2338413/91‑1 (MQ=255)

                         aCTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGca                                                                   <  1:1118038/91‑1 (MQ=255)

                            tCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGcatca                                                                >  2:3344620/1‑91 (MQ=255)

                             cGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTCATGTTGcatcat                                                               >  1:1508236/1‑91 (MQ=255)

                              gACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCAtt                                                              <  1:18972/91‑1 (MQ=255)

                              gACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCAtt                                                              <  2:937540/91‑1 (MQ=255)

                              gACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCAtt                                                              <  1:1374196/91‑1 (MQ=255)

                               aCAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCAttt                                                             <  1:3107133/91‑1 (MQ=255)

                                  aaTTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTaaa                                                          <  2:2177692/91‑1 (MQ=255)

                                    ttAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATg                                                        >  2:3269659/1‑91 (MQ=255)

                                    ttAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATg                                                        >  2:2221924/1‑91 (MQ=255)

                                    ttAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATg                                                        >  2:3745757/1‑91 (MQ=255)

                                      aaCATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGAt                                                      >  2:965010/1‑91 (MQ=255)

                                      aaCATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGAt                                                      >  1:3517330/1‑91 (MQ=255)

                                       aCATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGAtt                                                     <  2:1859670/91‑1 (MQ=255)

                                       aCATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGAtt                                                     >  2:2640397/1‑91 (MQ=255)

                                        cATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGAttt                                                    >  1:1622826/1‑91 (MQ=255)

                                        cATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGAttt                                                    >  2:3830006/1‑91 (MQ=255)

                                          taaataaaACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTc                                                  >  2:50637/1‑91 (MQ=255)

                                          taaataaaACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTc                                                  >  1:642318/1‑91 (MQ=255)

                                            aataaaACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGt                                                <  1:2557639/91‑1 (MQ=255)

                                            aataaaACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGCTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGt                                                >  2:3477540/1‑91 (MQ=255)

                                             ataaaACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTc                                               <  2:2815244/91‑1 (MQ=255)

                                             ataaaACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTc                                               >  1:2425316/1‑91 (MQ=255)

                                               aaaaCATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCaa                                             <  1:1888637/91‑1 (MQ=255)

                                               aaaaCATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCaa                                             <  2:1765159/91‑1 (MQ=255)

                                                aaaCATTGTAGCGCCTAAAACATTAATCTATGGCAGAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAATTGATTTTCGTCAAt                                            <  2:2291249/91‑1 (MQ=255)

                                                 aaCATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAAtt                                           <  1:3280754/91‑1 (MQ=255)

                                                 aaCATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAAtt                                           <  1:520194/91‑1 (MQ=255)

                                                  aCATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAAttt                                          >  1:2903212/1‑91 (MQ=255)

                                                    aTTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTGAATTTCt                                        >  2:3501556/1‑91 (MQ=255)

                                                    aTTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCt                                        <  2:1143978/91‑1 (MQ=255)

                                                     ttGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCtt                                       >  2:1231818/1‑91 (MQ=255)

                                                     ttGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCtt                                       <  1:317372/91‑1 (MQ=255)

                                                      tGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCTTTTAAATGATTTTCGTCAATTTCttt                                      <  2:2239966/91‑1 (MQ=255)

                                                      tGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCttt                                      >  1:1556817/1‑91 (MQ=255)

                                                        tAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGa                                    <  1:875608/91‑1 (MQ=255)

                                                         aGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGAt                                   >  1:2268562/1‑91 (MQ=255)

                                                          GCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCTTTTTATACTTATGTTGCATCAGTTAAATGATTCTCGTCAATTTCTTTGatt                                  <  2:822657‑M1/91‑2 (MQ=255)

                                                            gcctatgacatagattaatgttttaggcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCt                                >  1:784647‑M2/31‑91 (MQ=255)

                                                            GCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCt                                <  1:1865566‑M1/91‑1 (MQ=255)

                                                               TAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATc                             >  1:2682177‑M1/1‑91 (MQ=255)

                                                               TAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATc                             >  2:2132871‑M1/1‑91 (MQ=255)

                                                                atgacatagattaatgttttaggcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCt                            >  1:3460711‑M2/27‑91 (MQ=255)

                                                                AAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCt                            <  1:252432‑M1/91‑1 (MQ=255)

                                                                AAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCt                            >  1:1695618‑M1/1‑91 (MQ=255)

                                                                 tgacatagattaatgttttaggcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTa                           >  2:659538‑M2/26‑91 (MQ=255)

                                                                 tgacatagattaatgttttaggcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTa                           >  2:1586599‑M2/26‑91 (MQ=255)

                                                                 tgacatagattaatgttttaggcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTa                           >  1:753787‑M2/26‑91 (MQ=255)

                                                                 tgacatagattaatgttttaggcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATATCTTTGATGCTATCTa                           >  2:3032572‑M2/26‑91 (MQ=255)

                                                                 aaaCATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTa                           >  1:3115673/1‑91 (MQ=255)

                                                                  aaCATTAATCTATGGCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTAc                          <  2:1258765/91‑1 (MQ=255)

                                                                   acatagattaatgttttaggcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACa                         >  1:1243727‑M2/24‑91 (MQ=255)

                                                                    cATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACAt                        <  2:902723/91‑1 (MQ=255)

                                                                     aTTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATc                       >  2:2833674/1‑91 (MQ=255)

                                                                      ttAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCt                      >  1:338065/1‑91 (MQ=255)

                                                                       agattaatgttttaggcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTa                     >  1:950935‑M2/20‑91 (MQ=255)

                                                                        aaTCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTaa                    >  1:2135605/1‑91 (MQ=255)

                                                                         aTCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAac                   >  2:2912586/1‑91 (MQ=255)

                                                                         aTCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAac                   <  2:254562/91‑1 (MQ=255)

                                                                           cTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAacac                 <  1:1826290/91‑1 (MQ=255)

                                                                             aTGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGa               <  1:1742309/91‑1 (MQ=255)

                                                                              tGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGAc              >  1:3553291/1‑91 (MQ=255)

                                                                                  aTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCt          <  1:100113/91‑1 (MQ=255)

                                                                                  aTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCt          >  2:2321099/1‑91 (MQ=255)

                                                                                  aTAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCt          <  1:99550/91‑1 (MQ=255)

                                                                                    aggcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCttt        <  2:572858‑M2/85‑1 (MQ=255)

                                                                                    aggcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCttt        <  2:1728711‑M2/85‑1 (MQ=255)

                                                                                     ggcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGTTGCTATCTACATCTAACACGACATCTTTa       <  2:3255362‑M2/86‑1 (MQ=255)

                                                                                     ggcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTa       <  2:1196564‑M2/86‑1 (MQ=255)

                                                                                     ggcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTa       <  1:3920606‑M2/86‑1 (MQ=255)

                                                                                      gcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAg      <  1:2004388‑M2/87‑1 (MQ=255)

                                                                                      gcgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAg      <  2:305011‑M2/87‑1 (MQ=255)

                                                                                       cgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAgg     <  2:1798333‑M2/88‑1 (MQ=255)

                                                                                       cgcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATGTTCGGCAATTTCTTTGATGCTATCTACATCGAACACGACATCTttatg     <  2:3901042‑M2/88‑3 (MQ=255)

                                                                                        gcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGGt    >  2:316084‑M2/3‑91 (MQ=255)

                                                                                        gcACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGGt    <  1:3732272‑M2/89‑1 (MQ=255)

                                                                                         cACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGGtt   >  2:3014211‑M2/2‑91 (MQ=255)

                                                                                          aCGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGGttt  >  1:2710623/1‑91 (MQ=255)

                                                                                          aCGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGGttt  >  1:3940263/1‑91 (MQ=255)

CAATTGAATCCATTAGATGAGCCATACTTCGACAAATTAACATAAATAAAACATTGTAGCGCCTAAAACATTAATCTATGTCATAGGCGCACGTTTCGTTTTATACTTATGTTGCATCATTTAAATGATTTTCGTCAATTTCTTTGATGCTATCTACATCTAACACGACATCTTTAGGTTT  >  USA300TCH1516_ALE/194880‑195060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.