| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 231639 = | 201 (0.990) | 22 (0.120) | 13/146 | NT | 10.8% | intergenic (+8/‑197) | hsdR/USA300HOU_RS01035 | Type‑1 restriction enzyme R protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 231667 = | 179 (0.960) | intergenic (+36/‑169) | hsdR/USA300HOU_RS01035 | Type‑1 restriction enzyme R protein/hypothetical protein | |||||
AAAATTGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/231735‑231639‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agggggcATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTATAGAAA > USA300TCH1516_ALE/231667‑231756 AAAATTGTCTTGAAAACAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAACTAATAATGCCCCCTACACTAATCTAGCGA < 2:3433581/91‑1AAAATTGTATTGAAACCAAATGATGGTTGCCAAGCACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGA < 1:3505062/91‑1AAAATTGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGA < 1:1117086/91‑1AAAATTGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGA < 2:672113/91‑1AAAATTGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGA > 1:258977/1‑91 AAATTGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAG < 2:720279/91‑1 AATTGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGG > 1:1049734/1‑91 AATTGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGG < 1:756283/91‑1 AATTGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGG < 1:756282/91‑1 AATTGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGG < 1:3790480/91‑1 ATTGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGGG > 1:100511/1‑91 ATTGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGGG > 2:627036/1‑91 TTGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGGGG > 2:2314353/1‑91 TGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGGGGG > 2:697847/1‑91 TGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGGGGG > 1:3184728/1‑91 TGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGGGGG > 1:3184779/1‑91 TGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGGGGG < 2:23513/91‑1 TGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGGGGG < 1:397481/91‑1 TGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGGGGG < 2:1288098/91‑1 GTATTGAAGCCAAATGATGGTTGCCAAACACATGGTAACTAACAAATGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGAGGGC < 2:2911692/91‑1 GTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGGGGGC < 1:1839276/91‑1 GTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGGGGGC < 2:3417050/91‑1 GTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGGGGGC < 1:3037211/91‑1 GTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGAGAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGGGGGC < 1:3426726/91‑1 GTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGAGAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGGGGGC < 1:3426825/91‑1 TGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAACTAATAATGCCCCCTACACTAATCTAGCGAGGGGGCATTATTATTTTCTA > 1:3428616/1‑91 AATAATAATGCCCCCTACACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGG > 2:1555651/1‑91 AATAATAATGCCCCCTACACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGG > 2:1414562/1‑91 TAATAATGCCCCCTACACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTT > 1:795688/1‑91 ATAATGCCCCCTACACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTC > 1:3493574/1‑91 AATGCCCCCTACACTAATCTAGCGAGGGGGCATTATTATTTTCTCTCTTTTGTTCGGTACCATGTGTTTGGCAACCATCATTCTGTTTCca > 2:2220618/1‑89 TGCCCCCTACACTAATTTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATA > 2:2184673/1‑91 TGCCCCCTACACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTATCATGTGTTTGGCAACCATCATTTGGTTTCCATA > 2:1100933/1‑91 GCCCCCTACACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATAC > 2:1233773/1‑91 CCCCCTACACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACA > 2:181590/1‑91 CCCCCTACACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACA > 1:1714875/1‑91 CTACACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTT > 1:3514056/1‑91 TACACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTT > 2:3200675/1‑91 ACACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTA > 2:3120764/1‑91 ACACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTA > 2:3120811/1‑91 ACACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTA > 1:3796878/1‑91 CACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTAT > 2:1111284/1‑91 CACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTAT > 2:1206028/1‑91 CACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTAT > 2:2631440/1‑91 CACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTAT > 1:1625052/1‑91 CACTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTAT > 1:1627227/1‑91 CTAATCTAGCGAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAA > 1:118931/1‑91 AGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTA < 1:980856/91‑1 AGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTA > 2:1089663/1‑91 AGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTA > 1:92672/1‑91 AGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTA > 1:3931087/1‑91 GGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTAT > 1:3055562/1‑91 GGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTAT < 2:3297780/91‑1 GGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTAT > 1:2543898/1‑91 GGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTAT < 2:2082544/91‑1 GGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTAT > 1:1770786/1‑91 GGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCCATACAATTTTATAATTGTATGTGTATA > 2:1349926/1‑91 GGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTATA < 2:237712/91‑1 GGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTATA > 1:965605/1‑91 GGGCGTTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTATAG < 1:1138589/91‑1 GGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTATAG < 2:1050439/91‑1 GGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTATAG < 1:500457/91‑1 GGGCATTATTATTTTCTAGCTTTTTTTAGTTACCATGTGTTTGGCAACCATCATTTGTTTTCAATACAATTTTATAATCGTATGTGTATAt < 1:1138576/91‑2 GGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTATAGA < 2:3882276/91‑1 GGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTATAGA < 1:2850933/91‑1 GCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTATAGAA > 1:1386201/1‑91 GCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTATAGAA > 1:3270041/1‑91 GCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTATAGAA > 2:1962636/1‑91 GCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTATAGAA > 2:1962079/1‑91 GCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTATAGAA < 1:596945/91‑1 GCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGGATAGAA > 2:1963039/1‑91 GCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGCGTATAGAA > 2:2771261/1‑91 CATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTATAGAAA > 1:3543991/1‑91 CATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTATAGAAA > 1:1523342/1‑91 AAAATTGTATTGAAACCAAATGATGGTTGCCAAACACATGGTAACTAACAAAAGATAGAAAATAATAATGCCCCCTACACTAATCTAGCGAGGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/231735‑231639‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agggggcATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATACAATTTTATAATCGTATGTGTATAGAAA > USA300TCH1516_ALE/231667‑231756 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |