| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 231639 = | 201 (0.990) | 22 (0.120) | 13/146 | NT | 10.8% | intergenic (+8/‑197) | hsdR/USA300HOU_RS01035 | Type‑1 restriction enzyme R protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 231667 = | 179 (0.960) | intergenic (+36/‑169) | hsdR/USA300HOU_RS01035 | Type‑1 restriction enzyme R protein/hypothetical protein | |||||
Only 100 of 285 total aligned reads displayed.
ATTTGCCATTGAAAGAAAAGCGTAAAGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATAC > USA300TCH1516_ALE/231549‑231729 | tttctatacacatacgattataaaattgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatg > 1:3543991‑M1/91‑91 (MQ=255) tttGCCATTGAAAGAAAAGCGTAAAGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGc > 1:1759005/1‑91 (MQ=255) ttctatacacatacgattataaaattgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatGc > 2:1962636‑M1/90‑91 (MQ=255) ttctatacacatacgattataaaattgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatGc < 1:596945‑M1/2‑1 (MQ=255) tctatacacatacgattataaaattgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatGcc < 1:2850933‑M1/3‑1 (MQ=255) tGCCATTGAAAGAAAAGCGTAAAGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGccc > 1:37690/1‑91 (MQ=255) ctatacacatacgattataaaattgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatGccc < 2:1050439‑M1/4‑1 (MQ=255) ctatacacatacgattataaaattgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataacGccc < 1:1138589‑M1/4‑1 (MQ=255) tatacacatacgattataaaattgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatGcccc > 1:965605‑M1/87‑91 (MQ=255) tatacacatacgattataaaattgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatGcccc < 2:237712‑M1/5‑1 (MQ=255) atacacatacgattataaaattgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatGccccc > 1:2543898‑M1/86‑91 (MQ=255) atacacatacgattataaaattgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatGccccc > 1:3055562‑M1/86‑91 (MQ=255) tacacatacgattataaaattgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatGCCCCCt > 2:1089663‑M1/85‑91 (MQ=255) cATTGAAAGAAAAGCGTAAAGCAAGAAAAGCCAGTGAATCTTTCGTCGCAGAAACAACTAAAAAATACGGTGTGTAATGATTCAGCCCCCt > 1:3155683/1‑91 (MQ=255) aTTGAAAGAAAAGCGTAAAACAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAAATAAAAAATACGGTGTGTAATGATTCAGCCCCCTc < 2:3698414/91‑1 (MQ=255) tGAAAGAAAAGCGTAAAGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGc < 1:1289041/91‑1 (MQ=255) gaaagaaaAGCGTAAAGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCt > 2:2122124/1‑91 (MQ=255) gaaagaaaAGCGTAAAGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCt < 1:2599172/91‑1 (MQ=255) aagaaaAGCGTAAAGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAg > 1:178330/1‑91 (MQ=255) gaagAGCTTACAGAAAGAAAAACCACTTACTCTTTCGTGGCAGAAACGACTGGAAAATACGCAGTGGCCGGCTTCAGCCCCCTCGCTAGAt > 2:3367131/1‑91 (MQ=255) aaggCGTAAAGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTa < 2:3818595/88‑1 (MQ=255) aaaGCGTAAAGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTa > 2:1120304/1‑91 (MQ=255) aaGCGTAAAGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAg < 1:1123386/91‑1 (MQ=255) ataaaattgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatGCCCCCTCGCTAGATTAgtg > 2:1206028‑M1/72‑91 (MQ=255) ataaaattgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatGCCCCCTCGCTAGATTAgtg > 1:1627227‑M1/72‑91 (MQ=255) ataaaattgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatGCCCCCTCGCTAGATTAgtg > 2:2631440‑M1/72‑91 (MQ=255) taaaattgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatGCCCCCTCGCTAGATTAgtgt > 2:3120764‑M1/71‑91 (MQ=255) cGTAAAGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAgtgt > 2:2229368/1‑91 (MQ=255) cGTAAAGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAgtgt > 1:1382864/1‑91 (MQ=255) aaaGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAgg < 2:586766/91‑1 (MQ=255) aaaGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAgg > 2:3874098/1‑91 (MQ=255) aaGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAggg > 2:1690899/1‑91 (MQ=255) aaGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAggg > 1:54875/1‑91 (MQ=255) tgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatGCCCCCTCGCTAGATTAGTGTAggggg > 2:181590‑M1/65‑91 (MQ=255) tgtattgaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatGCCCCCTCGCTAGATTAGTGTAggggg > 1:1714875‑M1/65‑91 (MQ=255) tatggaaaccaaatgatggttgccaaacacatgataactaacaaaagatagaaaataataatGCCCCCTCGCTAGATTAGTGTAGGGGGCa > 2:1100933‑M1/63‑91 (MQ=255) aaGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCa > 1:3953030/1‑91 (MQ=255) aGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCat > 2:2844245/1‑91 (MQ=255) aGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCat > 2:850032/1‑91 (MQ=255) gAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCatt < 2:42721/91‑1 (MQ=255) aaaaGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCatta < 2:510534/91‑1 (MQ=255) gaaaccaaatgatggttgccaaacacatggtaactaacaaaagatagaaaataataatGCCCCCTCGCTAGATTAGTGTAGGGGGCattat > 1:3493574‑M1/59‑91 (MQ=255) aaaGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCattat > 2:2085307/1‑91 (MQ=255) aGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCattatta > 2:2190477/1‑91 (MQ=255) gCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCattattat > 1:323624/1‑91 (MQ=255) gCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCattattat > 1:1897678/1‑91 (MQ=255) ccATTGAATCTTTCGTGGCAGAAGCAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCattattatt < 2:3026682/91‑1 (MQ=255) ccATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCattattatt > 2:1485133/1‑91 (MQ=255) cATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTAttt < 2:2012016/91‑1 (MQ=255) cATTGAAGCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTCttt < 2:3500220/91‑1 (MQ=255) aTTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTAtttt < 1:2938011/91‑1 (MQ=255) ttGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTc < 2:3539594/91‑1 (MQ=255) aTCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATc > 2:1870797/1‑91 (MQ=255) tCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCt < 1:130772/91‑1 (MQ=255) ttCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCtttt < 1:1505823/91‑1 (MQ=255) ttCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCtttt < 1:3659064/91‑1 (MQ=255) ttCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCtttt > 2:1649049/1‑91 (MQ=255) tCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTg > 2:2678733/1‑91 (MQ=255) tCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTg > 1:2731440/1‑91 (MQ=255) tCGTGGCACAAACAACTGAAAAATATCGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTg < 2:3430169/91‑1 (MQ=255) gTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTgtt > 2:2079478/1‑91 (MQ=255) ggCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTgttag > 1:2121981/1‑91 (MQ=255) gCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTgttagt > 2:3278824/1‑91 (MQ=255) gCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTgttagt > 1:89047/1‑91 (MQ=255) cAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTgttagtt < 2:2547959/91‑1 (MQ=255) cAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTgttagtt < 1:2402263/91‑1 (MQ=255) aGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTgttagtta > 2:2731207/1‑91 (MQ=255) aaaCAACTGAAAAATTCGGTGTGTGATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTAcc < 1:616505/91‑1 (MQ=255) aacaacTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCa < 2:706082/91‑1 (MQ=255) aacaacTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCa < 1:1575489/91‑1 (MQ=255) acaacTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCAt > 2:1360064/1‑91 (MQ=255) acTGAAAAATACGGTGTGTAATGATTCAGCGCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCAtgtg > 1:121821/1‑91 (MQ=255) acTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCAtgtg > 1:1029130/1‑91 (MQ=255) acTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCAtgtg > 1:3335337/1‑91 (MQ=255) acTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCACTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCAtgtg > 1:2817786/1‑91 (MQ=255) cTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATgtgt > 2:970310/1‑91 (MQ=255) cTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATgtgt < 1:2154848/91‑1 (MQ=255) aaaaTACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTgg > 1:699748/1‑91 (MQ=255) aaaTACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGc > 1:2229309/1‑91 (MQ=255) aTACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCaa < 1:3905036/91‑1 (MQ=255) cGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGTATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACca < 1:3135220/91‑1 (MQ=255) cGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACca > 2:153560/1‑91 (MQ=255) cGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACca > 2:749906/1‑91 (MQ=255) cGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACca > 1:2452494/1‑91 (MQ=255) cGGTGTGTAATGATTCAGCCCCCTCGCTAGAGTAGTGTAGGGGGCATTATTATTTTCAATCTTTTGTTAGTTACCATGTGTTTGGCAACca > 1:3512073/1‑91 (MQ=255) gtgtgtAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACcatc < 1:2345835/91‑1 (MQ=255) gtgtgtAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACcatc < 1:437030/91‑1 (MQ=255) gtgtgtAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACcatc > 2:651383/1‑91 (MQ=255) gtgtgtAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACcatc > 1:3436857/1‑91 (MQ=255) gtAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCAttt > 1:2516537/1‑91 (MQ=255) tGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGtt < 2:3124309/91‑1 (MQ=255) ttCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACAATGTGTTTGGCAACCATAATTTGGTTTCa > 2:2559840/1‑91 (MQ=255) tCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCaa < 2:3161005/91‑1 (MQ=255) tCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCaa < 1:3227732/91‑1 (MQ=255) aGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATa > 2:2801582/1‑91 (MQ=255) aGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATa > 1:2060630/1‑91 (MQ=255) aGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATa > 1:1415217/1‑91 (MQ=255) GCCCTCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCATTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGCTTCAATAc < 2:2911692‑M1/91‑1 (MQ=255) GCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTCTCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATAc < 1:3426726‑M1/91‑1 (MQ=255) GCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATAc < 1:1839276‑M1/91‑1 (MQ=255) | ATTTGCCATTGAAAGAAAAGCGTAAAGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAATGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTTCTATCTTTTGTTAGTTACCATGTGTTTGGCAACCATCATTTGGTTTCAATAC > USA300TCH1516_ALE/231549‑231729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |