| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 256315 | 166 (0.810) | 9 (0.050) | 7/142 | NT | 5.6% | intergenic (+60/+299) | uhpT/USA300HOU_RS01135 | Hexose‑6‑phosphate:phosphate antiporter/putative response regulatory protein |
| ? | USA300TCH1516_ALE | = 256379 | 158 (0.880) | intergenic (+124/+235) | uhpT/USA300HOU_RS01135 | Hexose‑6‑phosphate:phosphate antiporter/putative response regulatory protein | |||||
TTCTATGAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/256217‑256315‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccccgaGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTCGGGGCAGGATTGCCAACTATATTG < USA300TCH1516_ALE/256379‑256290 TTCTATGAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCC > 2:2311428/1‑91TTCTATGAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCC > 1:702941/1‑91TTCTATGAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCC < 2:1663111/91‑1TTCTATGAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCC < 2:2178393/91‑1 TCTATGAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCT < 1:1178952/91‑1 TCTATGAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCT < 2:2595442/91‑1 CTATGAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTG < 2:1300436/91‑1 TATGAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGC > 2:1223829/1‑91 TATGAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGC < 1:3835394/91‑1 TATGAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGC < 2:1993334/91‑1 ATGAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCC > 2:2792223/1‑91 ATGAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCC < 2:1604394/91‑1 ATGAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCC > 1:1257759/1‑91 ATGAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCC > 2:388212/1‑91 GAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCC < 1:2731067/91‑1 AAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGTATGAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCG < 2:2619359/91‑1 AAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCG < 1:3316746/91‑1 AAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCG > 2:2610338/1‑91 AAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCG < 2:2616525/91‑1 AAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCG < 2:1356264/91‑1 AAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCG < 2:668166/91‑1 AGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGA > 2:2229671/1‑91 AGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGA > 1:958184/1‑91 AGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGAATAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGA > 2:2229748/1‑91 AAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGAGACATAGAGATGATATATTTG < 1:1829376/91‑1 TATTGCAATATAGTTGGCAATCCTGCCCCGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACAT < 1:3809112/91‑1 TATTGCAATATAGTTGGCAATCCTGCCCCGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACAT < 1:3809048/91‑1 ATTGCAATATAGTTGGCAATCCTGCCCCGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATG < 1:1041898/91‑1 ATTGCAATATAGTTGGCAATCCTGCCCCGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATG < 1:1041766/91‑1 TGCAATATAGTTGGCAATCCTGCCCCGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCC < 1:2740369/91‑1 GCAATATAGTTGGCAATCCTGCCCCGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCG < 1:411781/91‑1 AATATAGTTGGCAATCCTGCCCCGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTC < 1:2369657/91‑1 ATATAGTTGGCAATCCTGCCCCGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTCG < 1:2370415/91‑1 CTGCCCCGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTCGGGGCAGGATTGCCAA > 1:2833601/1‑91 CTGCCCCGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTCGGGGCAGGATTGCCAA > 2:2331607/1‑91 TGCCCCGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTCGGGGCAGGATTGCCAAC > 1:2692848/1‑91 TGCCCCGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTCGGGGCAGGATTGCCAAC < 2:3214654/91‑1 GCCCCGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTCGGGGCAGGATTGCCAACT < 1:411545/91‑1 GCCCCGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTCGGGGCAGGATTGCCAACT < 1:367355/91‑1 GCCCCGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTCGGGGCAGGATTGCCAACT < 1:3005501/91‑1 GCCCCGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTCGGGGCAGGATTGCCAACT < 1:537481/91‑1 CCCGAGACATAGAGATGATATATTTGCAAGGGTAGAGGCAGTATCTTTCATCTCTTCACGCACATGCCGTCGGGGCAGGATTGCCAACTAT < 2:3117664/91‑1 CGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTCGGGGCAGGATTGCCAACTATAT > 2:419034/1‑91 CGAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTCGGGGCAGGATTGCCAACTATAT < 2:655614/91‑1 GAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTCGGGGCAGGATTGCCAACTATATT > 1:2782009/1‑91 GAGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTCGGGGCAGGATTGCCAACTATATT > 1:187674/1‑91 AGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTCGGGGCAGGATTGCCAACTATATTG > 2:459705/1‑91 TTCTATGAAGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/256217‑256315‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccccgaGACATAGAGATGATATATTTGCAAGGGTAGAAGCAGTATCTTTCATCTCTTCACGCACATGCCGTCGGGGCAGGATTGCCAACTATATTG < USA300TCH1516_ALE/256379‑256290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |