BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 256315	166 (0.810)	9 (0.050)	7/142	NT	5.6%	intergenic (+60/+299)	uhpT/USA300HOU_RS01135	Hexose‑6‑phosphate:phosphate antiporter/putative response regulatory protein
*	?	USA300TCH1516_ALE	= 256379	158 (0.880)	9 (0.050)	7/142	NT	5.6%	intergenic (+124/+235)	uhpT/USA300HOU_RS01135	Hexose‑6‑phosphate:phosphate antiporter/putative response regulatory protein

Only 100 of 214 total aligned reads displayed.

GCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTCCTTACAATAAAGACA  >  USA300TCH1516_ALE/256289‑256468

gCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGtc                                                                                           >  2:229254/1‑91 (MQ=255)

     ataGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCCTCTACCCTTGCAAATATATCATCTCTATGTCtcggg                                                                                      <  2:3117664‑M2/91‑6 (MQ=255)

       aGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCtcggggc                                                                                    <  1:537481‑M2/91‑8 (MQ=255)

       aGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCtcggggc                                                                                    <  1:411545‑M2/91‑8 (MQ=255)

       aGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCtcggggc                                                                                    <  1:3005501‑M2/91‑8 (MQ=255)

       aGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCtcggggc                                                                                    <  1:367355‑M2/91‑8 (MQ=255)

         ttGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCtcggggcag                                                                                  >  1:2833601‑M2/1‑82 (MQ=255)

          tGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAACGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGa                                                                                 <  2:1303200/91‑1 (MQ=255)

          tGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGa                                                                                 >  2:745491/1‑91 (MQ=255)

          tGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGa                                                                                 >  1:838652/1‑91 (MQ=255)

          tGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGa                                                                                 >  2:1609685/1‑91 (MQ=255)

            gCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATc                                                                               >  2:3962746/1‑91 (MQ=255)

            gCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCACGGGGCAGATc                                                                               >  2:2748325/1‑91 (MQ=255)

               aTCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATa                                                                            <  1:3237418/91‑1 (MQ=255)

                 ccTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAAt                                                                          <  1:424132/91‑1 (MQ=255)

                  cTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAAtt                                                                         >  1:3732154/1‑91 (MQ=255)

                  cTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAAtt                                                                         >  1:2800714/1‑91 (MQ=255)

                  cTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAAtt                                                                         <  2:3143055/91‑1 (MQ=255)

                     ccccGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACGCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTccc                                                                      <  1:3143025/91‑1 (MQ=255)

                     ccccGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTccc                                                                      <  1:3915846/91‑1 (MQ=255)

                     ccccGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTccc                                                                      >  2:1598674/1‑91 (MQ=255)

                     ccccGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTccc                                                                      <  2:2338447/91‑1 (MQ=255)

                      cccGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCt                                                                     >  2:1464293/1‑91 (MQ=255)

                       ccGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTg                                                                    >  2:1014188/1‑91 (MQ=255)

                       ccGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTg                                                                    >  1:1871636/1‑91 (MQ=255)

                        cGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCtcggggcaggattgccaactatat                                                                   <  1:2370415‑M2/91‑25 (MQ=255)

                        cGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGt                                                                   >  1:1010952/1‑91 (MQ=255)

                         gACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGtt                                                                  <  1:3492163/91‑1 (MQ=255)

                            ggCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCGTCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATg                                                               <  2:2955521/91‑1 (MQ=255)

                            ggCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCtcggggcaggattgccaactatattgca                                                               <  1:2740369‑M2/91‑29 (MQ=255)

                            ggCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATg                                                               >  1:3356882/1‑91 (MQ=255)

                            ggCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATg                                                               >  1:2122521/1‑91 (MQ=255)

                              cATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCtcggggcaggattgccaactatattgcaat                                                             <  1:1041766‑M2/91‑31 (MQ=255)

                              cATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGaa                                                             >  1:1755974/1‑91 (MQ=255)

                               aTGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCtcggggcaggattgccaactatattgcaata                                                            <  1:3809112‑M2/91‑32 (MQ=255)

                                tgtgCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGt                                                           <  1:1223829/91‑1 (MQ=255)

                                 gtgCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTa                                                          <  2:1312471/91‑1 (MQ=255)

                                 gtgCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTa                                                          >  2:2619242/1‑91 (MQ=255)

                                 gtgCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTa                                                          >  1:2532873/1‑91 (MQ=255)

                                   gCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATc                                                        <  1:617378/91‑1 (MQ=255)

                                    tgTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCGTCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATcc                                                       <  2:425938/90‑1 (MQ=255)

                                     gTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCt                                                      <  1:3603812/91‑1 (MQ=255)

                                     gTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCt                                                      <  1:1506136/91‑1 (MQ=255)

                                     gTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCt                                                      >  1:2700309/1‑91 (MQ=255)

                                      tGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCtt                                                     >  2:1929844/1‑91 (MQ=255)

                                       gAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTa                                                    <  2:3838028/91‑1 (MQ=255)

                                          gagaTGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTAttt                                                 <  1:2230665/91‑1 (MQ=255)

                                           agaTGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTg                                                <  1:3486968/91‑1 (MQ=255)

                                            gaTGAAAGATACTGCTTCTGCCCATGTAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTgt                                               <  2:95611/91‑2 (MQ=255)

                                             aTGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTATATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGcc                                              >  2:1423422/1‑91 (MQ=255)

                                                   gATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACtt                                        >  2:3589666/1‑91 (MQ=255)

                                                   gATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACtt                                        >  2:2632047/1‑91 (MQ=255)

                                                   gATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACtt                                        <  1:937067/91‑1 (MQ=255)

                                                   gATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACtt                                        >  1:3358473/1‑91 (MQ=255)

                                                     tACTGCTTCTACCCTTGCAAATATATCATCTCGATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTGATTTGCCCGACTTAg                                      <  1:3371880/91‑1 (MQ=255)

                                                      aCTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAgg                                     <  1:1044073/91‑1 (MQ=255)

                                                        tGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGt                                   >  1:1328225/1‑91 (MQ=255)

                                                        tGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGt                                   >  1:2479706/1‑91 (MQ=255)

                                                        tGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGt                                   >  1:3325703/1‑91 (MQ=255)

                                                        tGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGt                                   >  1:2750627/1‑91 (MQ=255)

                                                         gCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTg                                  >  2:563430/1‑91 (MQ=255)

                                                         gCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTg                                  >  2:1798987/1‑91 (MQ=255)

                                                           ttCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGAc                                <  2:2836707/91‑1 (MQ=255)

                                                            tCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACt                               <  1:2879529/91‑1 (MQ=255)

                                                              tACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCa                             <  1:497975/91‑1 (MQ=255)

                                                               aCCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCaa                            >  1:832175/1‑91 (MQ=255)

                                                                cccTCGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAAt                           >  1:2074258/1‑91 (MQ=255)

                                                                 ccTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTCGGGTGACTCAATg                          >  2:3403113/1‑91 (MQ=255)

                                                                 ccTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATg                          >  1:1114657/1‑91 (MQ=255)

                                                                 ccTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATg                          <  1:2209715/91‑1 (MQ=255)

                                                                 ccTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATg                          <  1:2023059/91‑1 (MQ=255)

                                                                   ttGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCTTTATTTGCCCGCCTTAGGGTGACTCAATGaa                        <  2:1221683/91‑1 (MQ=255)

                                                                   ttGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGaa                        >  2:1227502/1‑91 (MQ=255)

                                                                   ttGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGaa                        >  1:844088/1‑91 (MQ=255)

                                                                     gCAAATATATCCTCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAAtt                      <  2:903866/91‑1 (MQ=255)

                                                                     gCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAAtt                      <  1:558610/91‑1 (MQ=255)

                                                                     gCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAAtt                      >  2:2714499/1‑91 (MQ=255)

                                                                     gCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAAtt                      >  1:3466237/1‑91 (MQ=255)

                                                                     gCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCGCTTTTGCCCGACTTAGGGTGACTCAATGAAtt                      <  2:3794455/91‑1 (MQ=255)

                                                                      cAAATATATCATCTCTATGTCtcggggcaggattgccaactatattgcaatagattggcgatacttttaatccgatttatattaaattttt                     <  1:1829376‑M2/91‑71 (MQ=255)

                                                                      cAAATATATCATCTCTATGTCTCGTAGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAAttt                     <  2:3553684/91‑1 (MQ=255)

                                                                      cAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAAttt                     <  2:674187/91‑1 (MQ=255)

                                                                       aaaTATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTa                    >  2:1647575/1‑91 (MQ=255)

                                                                        aaTATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTAc                   >  1:1719386/1‑91 (MQ=255)

                                                                          tatatCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTc                 >  2:138883/1‑91 (MQ=255)

                                                                           atatCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTcc                >  2:110105/1‑91 (MQ=255)

                                                                           atatCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTcc                >  1:883682/1‑91 (MQ=255)

                                                                            tatCATCTCTATGTCTCGGGGCAGATCATAATTCCCAGTTATGAAGTATCCTTATTTGCCCGAATTAGGGTGACTCAATGAATTTACTCCt               <  2:624519/91‑1 (MQ=255)

                                                                              tcatcTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTCCTTa             >  2:3218306/1‑91 (MQ=255)

                                                                              tcatcTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTCCTTa             >  2:2994457/1‑91 (MQ=255)

                                                                               catcTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTCCTTAc            <  2:2447513/91‑1 (MQ=255)

                                                                                atcTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTCCTTACa           <  2:1866682/91‑1 (MQ=255)

                                                                                atcTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTCCTTACa           >  2:6426/1‑91 (MQ=255)

                                                                                atcTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTCCTTACa           >  1:2624552/1‑91 (MQ=255)

                                                                                    ctATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTCCTTACAATaa       >  1:1984160/1‑91 (MQ=255)

                                                                                      aTGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTCCTTACAATAAAg     <  2:192915/91‑1 (MQ=255)

                                                                                       tGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTCCTTACAATAAAGa    >  1:1068742/1‑91 (MQ=255)

                                                                                        gTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTCCTTACAATAAAGAc   >  1:1029852/1‑91 (MQ=255)

                                                                                         tctcGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTCCTTACAATAAAGACa  >  2:3313334/1‑91 (MQ=255)

                                                                                         tctcGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTCCTTACAATAAAGACa  >  1:74224/1‑91 (MQ=255)

GCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTATGAAGTATCCTTATTTGCCCGACTTAGGGTGACTCAATGAATTTACTCCTTACAATAAAGACA  >  USA300TCH1516_ALE/256289‑256468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.