BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 256315	166 (0.810)	9 (0.050)	7/142	NT	5.6%	intergenic (+60/+299)	uhpT/USA300HOU_RS01135	Hexose‑6‑phosphate:phosphate antiporter/putative response regulatory protein
*	?	USA300TCH1516_ALE	= 256379	158 (0.880)	9 (0.050)	7/142	NT	5.6%	intergenic (+124/+235)	uhpT/USA300HOU_RS01135	Hexose‑6‑phosphate:phosphate antiporter/putative response regulatory protein

Only 100 of 232 total aligned reads displayed.

AGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTA  >  USA300TCH1516_ALE/256225‑256405

agaaaagaaaATTAGAAGTTTAAAAATTTAATATAAATCGGAATAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGA                                                                                            >  2:2229748‑M1/1‑91 (MQ=255)

 gaaaagaaaaTTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGAc                                                                                           >  2:703711/1‑91 (MQ=255)

   aaagaaaaTTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACgg                                                                                         <  1:2724656/91‑1 (MQ=255)

   aaagaaaaTTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACgg                                                                                         >  1:1551839/1‑91 (MQ=255)

    aagaaaaTTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGc                                                                                        <  1:1446377/91‑1 (MQ=255)

    aagaaaaTTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGc                                                                                        <  2:188114/91‑1 (MQ=255)

    aagaaaaTTAGAAGTTTAAAAATTTAATATAAAGCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGc                                                                                        <  2:1617110/91‑1 (MQ=255)

     agaaaaTTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCa                                                                                       >  2:797809/1‑91 (MQ=255)

     agaaaaTTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCa                                                                                       >  1:3849925/1‑91 (MQ=255)

       aaaaTTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCAtg                                                                                     <  1:2491394/91‑1 (MQ=255)

       aaaaTTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCAtg                                                                                     >  2:1392889/1‑91 (MQ=255)

        aaaTTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCAtgt                                                                                    >  1:2712814/1‑91 (MQ=255)

        aaaTTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCAtgt                                                                                    >  1:691206/1‑91 (MQ=255)

          aTTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGc                                                                                  >  1:2294513/1‑91 (MQ=255)

           ttAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCg                                                                                 <  2:1763/91‑1 (MQ=255)

           ttAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCg                                                                                 >  2:3312856/1‑91 (MQ=255)

             aGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTg                                                                               <  2:1353356/91‑1 (MQ=255)

             aGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTg                                                                               <  1:2742956/91‑1 (MQ=255)

             aGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTg                                                                               <  2:3363239/91‑1 (MQ=255)

             aGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTg                                                                               <  1:3861911/91‑1 (MQ=255)

             aGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTg                                                                               >  1:2615807/1‑91 (MQ=255)

              gAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGa                                                                              <  1:2909820/91‑1 (MQ=255)

              gAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGa                                                                              >  2:295599/1‑91 (MQ=255)

              gAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGa                                                                              <  2:3499630/91‑1 (MQ=255)

              gAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGa                                                                              <  1:1630320/91‑1 (MQ=255)

               aaGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGaa                                                                             >  1:1161667/1‑91 (MQ=255)

                   ttAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAgaga                                                                         >  2:3813753/1‑91 (MQ=255)

                     aaaaaTTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATg                                                                       <  1:3827115/91‑1 (MQ=255)

                      aaaaTTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGa                                                                      <  1:3498224/91‑1 (MQ=255)

                       aaaTTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGaa                                                                     <  2:2590081/91‑1 (MQ=255)

                       aaaTTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGaa                                                                     >  2:2485055/1‑91 (MQ=255)

                           ttAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGAt                                                                 >  1:3790633/1‑91 (MQ=255)

                            tAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATa                                                                >  1:3154390/1‑91 (MQ=255)

                              atatAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACt                                                              >  1:1312471/1‑91 (MQ=255)

                              atatAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACt                                                              >  2:2862761/1‑91 (MQ=255)

                              atatAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACt                                                              >  2:3101430/1‑91 (MQ=255)

                                ataAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGc                                                            >  2:1044073/1‑91 (MQ=255)

                                ataAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGc                                                            <  1:2020466/91‑1 (MQ=255)

                                 taAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCt                                                           >  2:2107898/1‑91 (MQ=255)

                                      cGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTAc                                                      <  1:2390455/91‑1 (MQ=255)

                                       ggATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTAcc                                                     >  2:44376/1‑91 (MQ=255)

                                       ggATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTAcc                                                     <  1:368971/91‑1 (MQ=255)

                                        gATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTAccc                                                    <  1:3082737/91‑1 (MQ=255)

                                         aTTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCt                                                   <  2:3048666/91‑1 (MQ=255)

                                          ttAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCtt                                                  >  2:1811331/1‑91 (MQ=255)

                                           tAAAAGTATCGCCAATCTATTGCAATGTAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTGCTACCCTTg                                                 <  2:2305971/91‑1 (MQ=255)

                                           tAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTg                                                 >  2:740464/1‑91 (MQ=255)

                                             aaaGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCa                                               >  1:1543688/1‑91 (MQ=255)

                                              aaGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCaa                                              <  1:3434688/91‑1 (MQ=255)

                                                 tATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAata                                           <  1:167507/91‑1 (MQ=255)

                                                  aTCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAatat                                          <  2:2011201/91‑1 (MQ=255)

                                                   tCGCCAATCTATTGCAATATATTTGGCAATCCTGCCCCGACGGCATGTGCGTGCAGAGATGAAAGATACTGCTTCTACCCGTGCAAataca                                         >  2:649597/1‑89 (MQ=255)

                                                   tCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAatata                                         <  1:2286983/91‑1 (MQ=255)

                                                    cGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAatatat                                        <  1:2589289/91‑1 (MQ=255)

                                                      ccAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATatca                                      >  1:2439518/1‑91 (MQ=255)

                                                      ccAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATatca                                      >  1:2240753/1‑91 (MQ=255)

                                                      ccAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATatca                                      >  1:3282379/1‑91 (MQ=255)

                                                      ccAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATatca                                      >  1:3289809/1‑91 (MQ=255)

                                                      ccAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATatca                                      >  1:3578744/1‑91 (MQ=255)

                                                      ccAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATatca                                      >  1:3652353/1‑91 (MQ=255)

                                                        aaTCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATatcatc                                    <  1:2666394/91‑1 (MQ=255)

                                                         aTCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCAtct                                   <  2:554040/91‑1 (MQ=255)

                                                          tCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCAtctc                                  <  1:2854249/91‑1 (MQ=255)

                                                          tCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCAtctc                                  <  1:1824124/91‑1 (MQ=255)

                                                            tATTGCAATATAGTTGGCAATCCTGCCCCGAgacatagagatgatatatttgcaagggtagaagcagtatctttcatctcttcacgcacat                                <  1:3809112‑M1/91‑61 (MQ=255)

                                                             aTTGCAATATAGTTGGCAATCCTGCCCCGAgacatagagatgatatatttgcaagggtagaagcagtatctttcatctcttcacgcacatg                               <  1:1041898‑M1/91‑62 (MQ=255)

                                                                gCAATATAGTTGGCAATCCTGCCCCGAgacatagagatgatatatttgcaagggtagaagcagtatctttcatctcttcacgcacatgccg                            <  1:411781‑M1/91‑65 (MQ=255)

                                                                  aaTATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCtc                          >  1:2782009‑M2/1‑89 (MQ=255)

                                                                   atatAGTTGGCAATCCTGCCCCGAgacatagagatgatatatttgcaagggtagaagcagtatctttcatctcttcacgcacatgccgtcg                         <  1:2370415‑M1/91‑68 (MQ=255)

                                                                   atatAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCtcg                         <  2:655614‑M2/91‑4 (MQ=255)

                                                                     ataGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCCTCTACCCTTGCAAATATATCATCTCTATGTCtcggg                       <  2:3117664‑M2/91‑6 (MQ=255)

                                                                       aGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCtcggggc                     <  1:3005501‑M2/91‑8 (MQ=255)

                                                                        gTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCtcggggca                    <  2:3214654‑M2/91‑9 (MQ=255)

                                                                         ttGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCtcggggcag                   >  2:2331607‑M2/1‑82 (MQ=255)

                                                                         ttGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCtcggggcag                   >  1:2833601‑M2/1‑82 (MQ=255)

                                                                          tGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAACGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGa                  <  2:1303200/91‑1 (MQ=255)

                                                                          tGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGa                  >  2:1609685/1‑91 (MQ=255)

                                                                          tGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGa                  <  2:91698/91‑1 (MQ=255)

                                                                          tGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGa                  >  1:838651/1‑91 (MQ=255)

                                                                          tGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGa                  >  1:839553/1‑91 (MQ=255)

                                                                            gCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATc                >  2:3962496/1‑91 (MQ=255)

                                                                            gCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATc                <  2:2555873/91‑1 (MQ=255)

                                                                            gCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCACGGGGCAGATc                >  2:2748325/1‑91 (MQ=255)

                                                                             cAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCa               >  1:2128732/1‑91 (MQ=255)

                                                                                  cTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAAtt          >  1:73783/1‑91 (MQ=255)

                                                                                  cTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAAtt          <  2:3584330/91‑1 (MQ=255)

                                                                                  cTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAAtt          <  2:3143055/91‑1 (MQ=255)

                                                                                    gCCCCGAgacatagagatgatatatttgcaagggtagaagcagtatctttcatctcttcacgcacatgccgtcggggcaggattgccaact        <  1:411545‑M1/91‑85 (MQ=255)

                                                                                    gCCCCGAgacatagagatgatatatttgcaagggtagaagcagtatctttcatctcttcacgcacatgccgtcggggcaggattgccaact        <  1:537481‑M1/91‑85 (MQ=255)

                                                                                    gCCCCGACGGCATGTGCGTGAAGAGACGAAAGATACTGCTTCTACCCTTGCAAATCTATCATCTCTATGTCTCGGGGCAGATCATAATTcc        >  2:3275977/1‑91 (MQ=255)

                                                                                     ccccGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTccc       >  2:1598674/1‑91 (MQ=255)

                                                                                      cccGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCt      >  2:1464293/1‑91 (MQ=255)

                                                                                       ccGGCGGCATGTGCGTGAATAGATGAGAGGTGCTGCGCCTACCCTTGCAAATATATCATCGCTATGGCTCGGGGCAGATCATAATTCCCTg     <  2:177195/91‑1 (MQ=255)

                                                                                       ccGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTg     >  2:1014188/1‑91 (MQ=255)

                                                                                       ccGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTg     >  1:1870119/1‑91 (MQ=255)

                                                                                        cGAgacatagagatgatatatttgcaagggtagaagcagtatctttcatctcttcacgcacatgccgtcggggcaggattgccaactatat    >  2:419034‑M1/1‑3 (MQ=255)

                                                                                        cGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGt    >  1:1010952/1‑91 (MQ=255)

                                                                                         gagacatagagatgatatatttgcaagggtagaagcagtatctttcatctcttcacgcacatgccgtcggggcaggattgccaactatatt   >  1:187674‑M1/1‑2 (MQ=255)

                                                                                         gACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCtcggggcaggattgccaactatatt   <  1:2369657‑M2/91‑26 (MQ=255)

                                                                                          agacatagagatgatatatttgcaagggtagaagcagtatctttcatctcttcacgcacatgccgtcggggcaggattgccaactatattg  >  2:459705‑M1/1‑1 (MQ=255)

AGAAAAGAAAATTAGAAGTTTAAAAATTTAATATAAATCGGATTAAAAGTATCGCCAATCTATTGCAATATAGTTGGCAATCCTGCCCCGACGGCATGTGCGTGAAGAGATGAAAGATACTGCTTCTACCCTTGCAAATATATCATCTCTATGTCTCGGGGCAGATCATAATTCCCTGTTA  >  USA300TCH1516_ALE/256225‑256405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.