| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 256532 | 170 (0.830) | 30 (0.180) | 14/132 | NT | 16.4% | intergenic (+277/+82) | uhpT/USA300HOU_RS01135 | Hexose‑6‑phosphate:phosphate antiporter/putative response regulatory protein |
| ? | USA300TCH1516_ALE | = 256554 | 167 (1.000) | intergenic (+299/+60) | uhpT/USA300HOU_RS01135 | Hexose‑6‑phosphate:phosphate antiporter/putative response regulatory protein | |||||
TTAGGGTGACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/256429‑256532‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagcggactgaTAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATATGTC < USA300TCH1516_ALE/256554‑256465 TTAGGGTGACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTCGGGAGTATTGTTTTATATTTAAACTCTCTA > 2:847195/1‑91TTAGGGTGACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTA < 1:2619242/91‑1 TAGGGTGACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAA > 1:626614/1‑91 AGGGTGACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAA > 2:863553/1‑91 AGGGTGACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAA < 2:1870119/91‑1 AGGGTGACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAA < 2:1871636/91‑1 AGGGTGACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAA > 2:2106897/1‑91 AGGGTGACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAA > 2:2107091/1‑91 GGGTGTCTCAATGAATTTTCTCCTTACAATAAAGACATATATCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAA < 2:3473691/91‑1 GGGTGACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAA > 1:936010/1‑91 GGTGACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAA > 2:1278307/1‑91 GGTGACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAA > 2:2713196/1‑91 GGTGACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTAATATTTAAACTCTCTAAAca > 2:2762907/1‑89 GTGATTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAG < 1:3299961/91‑1 GTGACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAG < 2:862905/91‑1 GACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCG > 2:2972182/1‑91 GACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCG > 1:1218529/1‑91 GACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCG > 1:1218514/1‑91 CTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGA > 1:2036152/1‑91 CAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACT > 2:1286828/1‑91 CAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACT < 1:718424/91‑1 CAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGAGGACT > 2:3200416/1‑91 ATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGA > 2:2289058/1‑91 CTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTT < 1:832378/91‑1 TACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCA < 2:3849925/91‑1 TACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTATCTAAAAAGCGGACTGATAGAGAAGTTTTCA < 2:3849540/91‑1 AAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTC < 2:193262/91‑1 AAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTC < 1:3305938/91‑1 AAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTC < 1:916968/91‑1 AAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTC < 1:3085382/91‑1 AAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGAAAGAGAAGTTTTCACTTTTC < 1:2279019/91‑1 AAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCT < 2:1257759/91‑1 AAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGAAAGAGAAGTTTTCACTTTTCT < 1:3274671/91‑1 AGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTT < 2:2967386/91‑1 AGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTT < 2:1480814/91‑1 AGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTT < 2:3488108/91‑1 AGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTT < 2:537481/91‑1 AGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTT < 1:2720482/91‑1 GACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTT < 1:176707/91‑1 ACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTATAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTC < 2:1700910/91‑1 ACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTC < 1:1451365/91‑1 ACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTC < 1:26273/91‑1 ACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTC < 2:2630758/91‑1 ATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAG < 1:110105/91‑1 ATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTC < 1:979828/91‑1 TAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCC < 1:797809/91‑1 TAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCC < 1:3656916/91‑1 AGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCG < 1:3759961/91‑1 CGGAGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCT < 1:3191931/91‑1 TGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTT < 1:2841616/91‑1 TGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTT < 1:2632047/91‑1 TGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTT < 1:2631799/91‑1 TTTTATATTTAAACTCTCTAAAAAGCGGACTGA‑A‑AGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATA > 1:2069797/1‑91 AAAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGgc < 2:3196890/91‑3 AAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACA < 2:2913582/91‑1 AAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACA > 1:601946/1‑91 AAAAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACA > 1:602057/1‑91 AAGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACC < 2:264254/91‑1 AGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCG < 1:2841855/91‑1 AGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCG > 2:2112449/1‑91 AGCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCG < 1:2841815/91‑1 GCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGC > 1:2485055/1‑91 GCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGC > 1:127346/1‑91 GCGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGC > 1:3101430/1‑91 CGGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCT < 2:521494/91‑1 GGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTA > 1:1330530/1‑91 GGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTA < 2:3539900/91‑1 GGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTA > 2:1043211/1‑91 GGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTA < 1:2307378/91‑1 GGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTA > 1:1330568/1‑91 GGACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTA < 2:1107022/91‑1 GGACTGATAGAGAAGTTGTCACTTTTCTGTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTA < 2:3539996/91‑1 GACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTAT < 1:1301935/91‑1 GACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTAT < 2:2070454/91‑1 GACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTAT < 2:1015391/91‑1 ACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATA > 1:2398160/1‑91 ACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATA > 1:1159256/1‑91 ACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATA > 1:2398182/1‑91 ACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATA < 2:2888450/91‑1 ACTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATA < 2:2888408/91‑1 CTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATAT > 2:2554917/1‑91 CTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATAT < 1:211586/91‑1 CTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATAT < 2:2219004/91‑1 CTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATAT < 2:3408114/91‑1 CTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATAT > 1:1525269/1‑91 CTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATAT > 2:1071915/1‑91 CTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATAT > 1:810878/1‑91 CTGATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATAT < 1:3822021/91‑1 GATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATATGT < 1:861358/91‑1 GATAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATATGT < 1:1737274/91‑1 ATAGAGAAGTTTTCACATTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATATGTC < 2:3772532/91‑1 TTAGGGTGACTCAATGAATTTACTCCTTACAATAAAGACATATAGCGGTGTCAATATTGTAGGGAGTATTGTTTTATATTTAAACTCTCTAAAAAGCGGACTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/256429‑256532‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagcggactgaTAGAGAAGTTTTCACTTTTCTTTCAGTCCGCTTTTTAGAGAGTTTAAATATAAAACAATACTCCCTACAATATTGACACCGCTATATGTC < USA300TCH1516_ALE/256554‑256465 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |