| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 263517 = | 156 (0.770) | 24 (0.130) | 8/146 | NT | 13.5% | intergenic (+16/‑320) | pflA/ugpQ_2 | Pyruvate formate‑lyase‑activating enzyme/Glycerophosphodiester phosphodiesterase, cytoplasmic |
| ? | USA300TCH1516_ALE | 263566 = | 166 (0.890) | intergenic (+65/‑271) | pflA/ugpQ_2 | Pyruvate formate‑lyase‑activating enzyme/Glycerophosphodiester phosphodiesterase, cytoplasmic | |||||
TTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/263613‑263517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcttttTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTAGCTA > USA300TCH1516_ALE/263566‑263654 TTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTT < 2:1370823/91‑1TTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTT < 1:876133/91‑1TTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTT < 1:2242227/91‑1 TGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTT < 1:2950714/91‑1 TCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCT > 2:2614450/1‑91 TCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCT < 1:1587385/91‑1 TCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCT < 1:3087474/91‑1 TCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCT > 1:2704656/1‑91 CTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTT > 1:3215695/1‑91 CTCATATACTTACTACGTCTTGCTAATACTCAATACTAAATTGAAAAAGAAGTATATGCCCCTTAACTCTTGAAGTTGCATATGATTTCTT > 1:365044/1‑91 TCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTT > 2:3952107/1‑91 TCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTT > 1:803509/1‑91 TCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTT < 1:672905/91‑1 TCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTT > 1:3247913/1‑91 TCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTC‑TTTTCAATTGAGTATTGAGTATTAGCAAGAC > 1:3836930/1‑91 AAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATAT > 1:1117890/1‑91 AGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGA > 1:480292/1‑91 AGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGA > 1:480537/1‑91 GAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACA > 1:1166041/1‑91 GAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACA > 1:1315718/1‑91 AAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACA > 1:3591980/1‑91 AAGCATATGCCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGTCAA > 1:3065756/1‑91 AGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAA > 1:313056/1‑91 AGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAA > 1:313081/1‑91 GCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAAC > 2:899795/1‑91 GCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAAC > 1:1308176/1‑91 GCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAAC > 1:1308184/1‑91 TATGCCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCT > 2:829396/1‑91 TATGCCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCT > 1:2805911/1‑91 ATGCCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTA > 1:2516931/1‑91 TGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTA > 2:2922629/1‑91 GCCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGANACAACTTCTACA > 1:177993/1‑91 GCCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATGGAGTATTGAGTATTAGCAAGACGTAGTATGTATATGATACAACTTCTACA > 1:177995/1‑91 CCCCTTCACTCTTGAAGTTGCATCTGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCCAGACGTAGTAAGGATATGAGACAACTTCTACAA > 1:2548806/1‑91 CCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAA > 1:2916241/1‑91 CCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAA > 1:2916252/1‑91 CCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAAT > 1:2427438/1‑91 CTCTTGAAGTTGCATATGCTTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGA > 1:2131528/1‑91 TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGT < 1:1627481/91‑1 TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGT < 1:306063/91‑1 TCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACCTTTTTGTAAGTA > 2:3290355/1‑91 TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTAGC > 1:3423878/1‑91 TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTAGC > 1:2529401/1‑91 TTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTAGCTA < 1:2100034/91‑1 TTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTAGCTA > 1:3896172/1‑91 TTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTAGCTA > 2:1643234/1‑91 TTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTAGCTA > 2:2615440/1‑91 TTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/263613‑263517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcttttTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTAGCTA > USA300TCH1516_ALE/263566‑263654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |