| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 263517 = | 156 (0.770) | 24 (0.130) | 8/146 | NT | 13.5% | intergenic (+16/‑320) | pflA/ugpQ_2 | Pyruvate formate‑lyase‑activating enzyme/Glycerophosphodiester phosphodiesterase, cytoplasmic |
| ? | USA300TCH1516_ALE | 263566 = | 166 (0.890) | intergenic (+65/‑271) | pflA/ugpQ_2 | Pyruvate formate‑lyase‑activating enzyme/Glycerophosphodiester phosphodiesterase, cytoplasmic | |||||
Only 100 of 229 total aligned reads displayed.
AAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTAGCTATG > USA300TCH1516_ALE/263476‑263656 | atatacttactacgtcttgctaatactcaatactcaattgaAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑ttttt > 1:1117890‑M1/42‑91 (MQ=255)aaGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑ttttt > 1:1023112/1‑91 (MQ=255) gggAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCa < 2:2709291/91‑1 (MQ=255) ggAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCaa < 1:3960471/91‑1 (MQ=255) aaaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAatt < 2:2278200/91‑1 (MQ=255) aaaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAatt < 1:265555/91‑1 (MQ=255) aaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattg < 1:3013297/91‑1 (MQ=255) aaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATCTGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattga > 1:3135744/1‑91 (MQ=255) aaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattga < 1:1219954/91‑1 (MQ=255) aaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattga > 1:1231287/1‑91 (MQ=255) aaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattga > 1:3870796/1‑91 (MQ=255) aTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGACAGCATATGCAACTTCAAGAGTGAAGGGGCCTACGCTTC‑TTTTTCAattgag > 2:1664251/1‑91 (MQ=255) cccGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattgagtat > 2:161500/1‑91 (MQ=255) cccGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattgagtat > 1:3665597/1‑91 (MQ=255) cccGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattgagtat < 1:1253007/91‑1 (MQ=255) cGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattgagtattg < 1:175212/91‑1 (MQ=255) cGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATACAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattgagtattg < 2:2396876/91‑1 (MQ=255) gTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattgagtattga > 2:111065/1‑91 (MQ=255) ttGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattgagtattgag < 1:1384222/91‑1 (MQ=255) tGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattgagtattgagt < 2:2558267/91‑1 (MQ=255) tGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattgagtattgagt > 1:151210/1‑91 (MQ=255) gAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAAttgagtattgagta < 1:2131732/91‑1 (MQ=255) gAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAAttgagtattgagta < 2:327006/91‑1 (MQ=255) aaTTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATtgagtattgagtat < 2:86773/91‑1 (MQ=255) aaTTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATtgagtattgagtat < 1:2835888/91‑1 (MQ=255) ttATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTa > 2:3138875/1‑91 (MQ=255) tataAATACAATTCAGACTGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAg > 2:1824066/1‑91 (MQ=255) ataAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGc > 1:3311254/1‑91 (MQ=255) ataAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGc > 1:1102825/1‑91 (MQ=255) ataAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGc > 2:2104207/1‑91 (MQ=255) aaaTACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCaa > 1:85264/1‑91 (MQ=255) tACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGAc > 2:1189465/1‑91 (MQ=255) tACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGAc > 1:3828335/1‑91 (MQ=255) tACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGAc < 1:2520949/91‑1 (MQ=255) cAATTCAGAGCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACgt < 2:2611038/91‑1 (MQ=255) aaTTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACgta < 1:3901201/91‑1 (MQ=255) agtCAGGCCGAAAATAAAGCATATGCAAGTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTATCAAGACgtag < 2:693517/89‑1 (MQ=255) aTTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACgtag > 2:3001190/1‑91 (MQ=255) aTTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACgtag < 1:2537146/91‑1 (MQ=255) tCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACgtagta < 2:2745734/91‑1 (MQ=255) aGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTagtaag < 1:983888/91‑1 (MQ=255) aGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTagtaag < 1:1869063/91‑1 (MQ=255) gACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTagtaagt < 1:3484912/91‑1 (MQ=255) AAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATga < 1:672905‑M1/91‑1 (MQ=255) AAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATga > 1:803509‑M1/1‑91 (MQ=255) AAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATga > 1:3247913‑M1/1‑91 (MQ=255) AAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATga > 2:3952107‑M1/1‑91 (MQ=255) AGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATgaga < 1:1587385‑M1/91‑1 (MQ=255) AGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATgaga > 1:2704656‑M1/1‑91 (MQ=255) agaagcatatgccccttcactcttgaagttgcatatgctttcttttTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATgaga > 1:480292‑M2/47‑91 (MQ=255) gaagcatatgccccttcactcttgaagttgcatatgcttcttttTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACa > 1:1166041‑M2/45‑91 (MQ=255) gaagcatatgccccttcactcttgaagttgcatatgcttcttttTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACa > 1:1315718‑M2/45‑91 (MQ=255) aagcatatgccccttcactcttgaagttgcatatgcttcttttTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGTCaa > 1:3065756‑M2/44‑91 (MQ=255) gcatatgccccttcactcttgaagttgcatatgctttcttttTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAAc > 1:1308176‑M2/43‑91 (MQ=255) gCATATGCAACTTCCAGAGTGCAGGGGTATACGCCTC‑TTTTTCACTTGTGTATTGAGTATTAGCAAGACGGAGTATGTATATGAGACAACt > 2:1410163/1‑91 (MQ=255) gCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACt < 1:550763/91‑1 (MQ=255) gCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACt > 1:2372995/1‑91 (MQ=255) atatGTAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTc < 1:2453824/91‑1 (MQ=255) tatgccccttcactcttgaagttgcatatgcttcttttTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCt > 1:2805911‑M2/39‑91 (MQ=255) atGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTa > 2:3079747/1‑91 (MQ=255) tgccccttcactcttgaagttgcatatgctttcttttTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTa > 2:2922629‑M2/38‑91 (MQ=255) gccccttcactcttgaagttgcatatgcttcttttTCAATGGAGTATTGAGTATTAGCAAGACGTAGTATGTATATGATACAACTTCTACa > 1:177995‑M2/36‑91 (MQ=255) cAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACaa < 2:1287987/91‑1 (MQ=255) cAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATCGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACaa > 2:1978569/1‑91 (MQ=255) ccccttcactcttgaagttgcatatgcttcttttTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACaa > 1:2916252‑M2/35‑91 (MQ=255) aCTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATg > 2:2624673/1‑91 (MQ=255) aCTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATg > 1:1070398/1‑91 (MQ=255) ttCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGt > 1:269335/1‑91 (MQ=255) cAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTg > 1:2899081/1‑91 (MQ=255) cAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTg > 2:2667769/1‑91 (MQ=255) aaGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTga > 1:835121/1‑91 (MQ=255) aaGAGTGAAGGGGCATATGCTGC‑GTTTTCAATTGCGTGGTGAGTATTAGCAAGACGTAGTACGTATATGAGACAACTTCTACAATGGTTga < 2:1370517/91‑1 (MQ=255) agagTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTgaa > 1:590537/1‑91 (MQ=255) gagTGAAGGGGCATATGCTTC‑TTTTTCTTTTTTGTTTTTAGTATTTGCAAGACGTAGTAAGTATATGAGACAACTTCTTCACAGGTTgaag > 2:3961456/1‑91 (MQ=255) agTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTgaagg > 2:89790/1‑91 (MQ=255) agTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTgaagg > 2:582768/1‑91 (MQ=255) agTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTgaagg < 1:3198543/91‑1 (MQ=255) agTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTgaagg > 1:3638202/1‑91 (MQ=255) gTGAAGGCGCATATGCTTC‑TTTTTCAATTGCGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGCCAACTTCTACAATGGTTgaaggc > 2:2925316/1‑90 (MQ=255) gAAGGGGCATATGCTTCTTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTgaaggaa > 1:3104446/1‑91 (MQ=255) gAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTgaaggaag > 2:2501896/1‑91 (MQ=255) gAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTgaaggaag < 1:2867993/91‑1 (MQ=255) aGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGAc < 1:3769177/91‑1 (MQ=255) aGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGAc > 1:2831234/1‑91 (MQ=255) ggggCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACg < 1:357808/91‑1 (MQ=255) ggggCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACg < 1:357285/91‑1 (MQ=255) ggggCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAACACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACg > 2:3045684/1‑91 (MQ=255) gggCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGt < 1:2211533/91‑1 (MQ=255) ggCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGtt > 1:2572316/1‑91 (MQ=255) ggCATATGCTTC‑TTTTTCAATAGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGtt < 2:1026059/91‑1 (MQ=255) cATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGtttt < 2:1556514/91‑1 (MQ=255) tatGCTTC‑TTGTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTg < 2:258055/91‑1 (MQ=255) tGCTTC‑TTTTTCAAGTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACATCTACAATGGTTGAAGGAAGACGTTTTTGTa > 2:193512/1‑91 (MQ=255) cttc‑ttTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAg > 2:3337261/1‑91 (MQ=255) ttcttttTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGt < 1:1627481‑M2/84‑1 (MQ=255) tcttttTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACCTTTTTGTAAGTa > 2:3290355‑M2/7‑91 (MQ=255) ttTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTAGCTa < 1:2100034‑M2/89‑1 (MQ=255) ttTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTAGCTa > 2:1643234‑M2/3‑91 (MQ=255) tCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAAGTCCTACAATGGTTGAAGGAATACGTTTTTGTAAGTAGCTATg < 2:417032/91‑1 (MQ=255) tCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTAGCTATg > 1:1696518/1‑91 (MQ=255) | AAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTAGCTATG > USA300TCH1516_ALE/263476‑263656 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |