| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 263517 = | 156 (0.770) | 24 (0.130) | 8/146 | NT | 13.5% | intergenic (+16/‑320) | pflA/ugpQ_2 | Pyruvate formate‑lyase‑activating enzyme/Glycerophosphodiester phosphodiesterase, cytoplasmic |
| ? | USA300TCH1516_ALE | 263566 = | 166 (0.890) | intergenic (+65/‑271) | pflA/ugpQ_2 | Pyruvate formate‑lyase‑activating enzyme/Glycerophosphodiester phosphodiesterase, cytoplasmic | |||||
Only 100 of 277 total aligned reads displayed.
CGCCCGATGATGAAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTA > USA300TCH1516_ALE/263428‑263603 | tagctacttacaaaaacgtcttccttcaaccattgtagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaaa < 1:2100034‑M1/2‑1 (MQ=255)tagctacttacaaaaacgtcttccttcaaccattgtagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaaa > 1:3896172‑M1/90‑91 (MQ=255) gcCCGATGATGAAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGaaa > 2:3703818/1‑91 (MQ=255) gctacttacaaaaacgtcttccttcaaccattgtagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaaaaa > 1:2529401‑M1/88‑91 (MQ=255) cccGATGATGAAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGaaaa > 1:3741695/1‑91 (MQ=255) ccGATGATGAAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAaaag > 1:3693251/1‑91 (MQ=255) ccGATGATGAAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAaaag < 2:517295/91‑1 (MQ=255) ccGATGATGAAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAaaag < 2:1106746/91‑1 (MQ=255) tacttacaaaaaggtcttccttcaaccattgtagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaAaaaga > 2:3290355‑M1/86‑91 (MQ=255) cGATGATGAAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAaaaga < 1:1168125/91‑1 (MQ=255) acttacaaaaacgtcttccttcaaccattgtagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaAaaagaa < 1:306063‑M1/7‑1 (MQ=255) acttacaaaaacgtcttccttcaaccattgtagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaAaaagaa < 1:1627481‑M1/7‑1 (MQ=255) gatgaAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGC < 1:3757036‑M1/91‑1 (MQ=255) atgaAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCA < 1:3622378‑M1/91‑1 (MQ=255) tgaAGCTGTTAAAGCAGCCTACCGTCATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGACAAGAAAGCAT > 2:3597396‑M1/1‑91 (MQ=255) aaGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCtgct < 2:2352839‑M1/91‑5 (MQ=255) aaGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATAT > 2:1042732‑M1/1‑91 (MQ=255) aGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATG > 2:1269173‑M1/1‑91 (MQ=255) aaaGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTc > 2:661435/1‑91 (MQ=255) aaaGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTc > 2:2647359/1‑91 (MQ=255) gcagcCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAag > 1:1135484/1‑91 (MQ=255) agcCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGTATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAagag < 1:3348867/91‑1 (MQ=255) agcCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAagag < 1:3291669/91‑1 (MQ=255) ccTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTg < 1:2988572/91‑1 (MQ=255) ccTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTg > 1:2342034/1‑91 (MQ=255) tACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCcccttcactcttgaa < 1:2489358‑M1/91‑16 (MQ=255) ccGTTATGTTAACTTCGAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAgg < 2:3784522/91‑1 (MQ=255) ccGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAgg < 2:2493641/91‑1 (MQ=255) attgtagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaAAAAGAA‑GCATATGCAACTTCAAGAGTGAAggg > 1:2427438‑M1/59‑91 (MQ=255) ttgtagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaAAAAGAA‑GCATATGCAACTTCAAGAGTGAAgggg > 1:2916252‑M1/58‑91 (MQ=255) cGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAggg > 1:1087476/1‑91 (MQ=255) cGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAggg > 2:2807081/1‑91 (MQ=255) tgtagaagttgtntcatatacttactacgtcttgctaatactcaatactcaattgaAAAAGAA‑GCATATGCAACTTCAAGAGTGAAGGGGc > 1:177993‑M1/57‑91 (MQ=255) gTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCcccttcactcttgaagttg < 1:1455951‑M1/91‑20 (MQ=255) gTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGg < 2:3503169‑M2/91‑2 (MQ=255) gTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGg < 2:1411501‑M2/91‑2 (MQ=255) ttATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGgc > 1:3241869‑M2/1‑89 (MQ=255) gtaTGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCcccttcactcttgaagttgc < 2:1037397‑M1/90‑21 (MQ=255) tagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCa > 2:2922629‑M1/55‑91 (MQ=255) tATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGgca < 1:1330237‑M2/91‑4 (MQ=255) agaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaAAAAGAA‑GCATATGCAACTTCAAGAGTGAAGGGGCata > 2:829396‑M1/54‑91 (MQ=255) aTGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCcccttcactcttgaagttgcat < 2:2964700‑M1/91‑23 (MQ=255) gTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGgcatat > 1:2903925‑M2/1‑85 (MQ=255) gTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGgcatat > 1:3113728‑M2/1‑85 (MQ=255) gTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGgcatat > 2:2070553‑M2/1‑85 (MQ=255) gTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGgcatat > 1:1890667‑M2/1‑85 (MQ=255) ttAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGgcatatg < 1:2773791‑M2/91‑8 (MQ=255) ttAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGgcatatg > 1:1204868‑M2/1‑84 (MQ=255) tAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGgcatatgc > 2:1169422‑M2/1‑83 (MQ=255) tAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAG‑AAGCATATGCcccttcactcttgaagttgcatatgct < 1:2570627‑M1/91‑28 (MQ=255) gttgtctcatatacttactacgtcttgctaatactcaatactcaattgaAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGc > 1:1308184‑M1/50‑91 (MQ=255) ttgtctcatatacttactacgtcttgctaatactcaatactcaattgaAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGct > 1:313081‑M1/49‑91 (MQ=255) acgtCAAAGGGGAAATTCCCGTTGAAGTATAAAAACAATGCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGctt < 2:21621/88‑1 (MQ=255) aCTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGCAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGgcatatgctt < 1:3952107‑M2/91‑11 (MQ=255) cTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGcttc > 2:611252/1‑91 (MQ=255) cTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGcttc < 2:1389766/91‑1 (MQ=255) ttCAAAGGGAAAATTCCCGTTGTATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGcttc‑t < 2:3006738/91‑1 (MQ=255) ttCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGcttc‑t < 1:2209193/91‑1 (MQ=255) ttCAAAGGGAAAACTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGcttc‑t < 1:3830950/91‑1 (MQ=255) cAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑ttt < 2:1655115/91‑1 (MQ=255) cAAAGGGAAAATTCCCGTTGAATTAT‑AATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGATTC‑tttt > 2:3850943/1‑91 (MQ=255) aaaGGGAAAATTCCCGTTGAATTATACATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑tttt > 2:2240356/1‑91 (MQ=255) aaGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑ttttt > 1:1023112/1‑91 (MQ=255) gggAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCa < 2:2709291/91‑1 (MQ=255) gAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGCACGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAat > 1:1520890/1‑91 (MQ=255) gAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAat > 2:1969688/1‑91 (MQ=255) aaaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAatt < 1:265555/91‑1 (MQ=255) aaaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAatt < 2:2278200/91‑1 (MQ=255) aaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAgttg > 1:3561764/1‑91 (MQ=255) aaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattg < 1:41781/91‑1 (MQ=255) aaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattg > 2:3135527/1‑91 (MQ=255) aaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattga > 1:791480/1‑91 (MQ=255) aaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattga > 1:1231287/1‑91 (MQ=255) cccGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattgagtat < 1:1253007/91‑1 (MQ=255) cccGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattgagtat > 2:161500/1‑91 (MQ=255) ccGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattgagtatt > 2:1361164/1‑91 (MQ=255) cGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATACAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattgagtattg < 2:2398149/91‑1 (MQ=255) gTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattgagtattga < 1:840031/91‑1 (MQ=255) ttGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattgagtattgag < 1:1384222/91‑1 (MQ=255) tGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAattgagtattgagt < 1:1851242/91‑1 (MQ=255) gAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAAttgagtattgagta < 1:2131732/91‑1 (MQ=255) aaTTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATtgagtattgagtat > 2:2743674/1‑91 (MQ=255) aaTTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTGCAAGAGTGAAGGGGCATATGCTCC‑TTTTTCAATtgagtattgagtat < 2:405527/91‑1 (MQ=255) aTTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTgagtattgagtatt > 1:3919522/1‑91 (MQ=255) ttATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTTCAATTgagtattgagtatt > 1:1295385/1‑91 (MQ=255) tataAATACAATTCAGACTGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAg > 2:1824066/1‑91 (MQ=255) ataAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGc > 1:90812/1‑91 (MQ=255) ataAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGc > 1:1102825/1‑91 (MQ=255) taAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCa > 1:552684/1‑91 (MQ=255) aTACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGa < 1:2701293/91‑1 (MQ=255) aCAATTCAGACCGAAAAGAAAGCATATGCACCTTCTAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTCAGTATTGAGTATTAGCGAGACg > 2:3195322/1‑91 (MQ=255) aCAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACg > 2:2314497/1‑91 (MQ=255) cAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACgt < 2:2610135/91‑1 (MQ=255) agtCAGGCCGAAAATAAAGCATATGCAAGTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTATCAAGACgtag < 2:693517/89‑1 (MQ=255) aTTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACgtag > 2:1527624/1‑91 (MQ=255) tCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACgtagta > 2:1658182/1‑91 (MQ=255) tCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACgtagta > 1:3479330/1‑91 (MQ=255) tCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACgtagta < 1:2844910/91‑1 (MQ=255) aGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTagtaag < 1:983888/91‑1 (MQ=255) aCCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTagtaagta > 2:869088/1‑91 (MQ=255) | CGCCCGATGATGAAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTC‑TTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTA > USA300TCH1516_ALE/263428‑263603 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |