| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 313030 | 173 (0.850) | 10 (0.050) | 6/146 | NT | 6.2% | intergenic (+83/+351) | bglA/rebM | Aryl‑phospho‑beta‑D‑glucosidase BglA/Demethylrebeccamycin‑D‑glucose O‑methyltransferase |
| ? | USA300TCH1516_ALE | = 313078 | 146 (0.790) | intergenic (+131/+303) | bglA/rebM | Aryl‑phospho‑beta‑D‑glucosidase BglA/Demethylrebeccamycin‑D‑glucose O‑methyltransferase | |||||
GAGATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/312934‑313030‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccccGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATATTAATT < USA300TCH1516_ALE/313078‑312989 GAGATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCG < 1:2832789/91‑1GAGATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCG > 2:2483451/1‑91GAGATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCG < 1:125669/91‑1GAGATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCG > 1:1324252/1‑91GAGATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCG > 1:1324478/1‑91GAGATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCG < 2:1545637/91‑1GAGATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCG > 1:3519414/1‑91 gGATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGG < 2:1204508/90‑1 AGATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGG > 1:672502/1‑91 AGATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGG > 1:1810915/1‑91 GATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGG > 1:709842/1‑91 GATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGG < 1:1255773/91‑1 GATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGG > 1:3078488/1‑91 GATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGG > 1:2890266/1‑91 GATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGG < 1:3856153/91‑1 GATAAAGTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGG > 1:3077979/1‑91 ATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGC < 2:150261/91‑1 ATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAACCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGC > 2:3254109/1‑91 TAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGCGACATAAATTAATATAGTACAACCTACAGTATTATAATGGCGGGCC > 2:3424861/1‑91 AAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCC > 2:1869646/1‑91 AAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCC > 2:3162582/1‑91 AAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCC > 1:2241958/1‑91 AAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCC > 1:3492036/1‑91 AAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCC > 2:3708026/1‑91 AATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCg > 2:3931437/1‑90 AATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCC < 2:3046786/91‑1 AATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCC < 2:3046683/91‑1 AATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCC > 2:3866954/1‑91 ACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGT < 2:420154/91‑1 ACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGT < 2:420174/91‑1 ACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGT < 2:977022/91‑1 CATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTG < 2:1854809/91‑1 ATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGT < 1:3901585/91‑1 ATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGT < 1:3901529/91‑1 AAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTG < 1:1060179/91‑1 AAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTG < 1:134119/91‑1 ATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGG < 1:2726965/91‑1 ATTAATATAGTAGGACCTACAGTGTTATAATG‑‑GGGCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGG < 1:1742071/91‑1 tggtGCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTA < 2:1495586/87‑1 GGGCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATA < 2:1817558/91‑1 GGGCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATA < 1:2557129/91‑1 GGCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATAT < 2:787850/91‑1 GGCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATAT > 2:2904093/1‑91 GCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATATT > 1:2523763/1‑91 GCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATATT > 1:2652869/1‑91 CCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATATTAAT > 1:1902012/1‑91 CCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATATTAAT > 1:3518059/1‑91 CCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATATTAAT > 2:2382245/1‑91 CCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATATTAAT > 2:2382144/1‑91 CCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATATTAAT > 2:972833/1‑91 CCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATATTAAT > 2:973166/1‑91 CGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATATTAATT > 1:1864137/1‑91 CGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATATTAATT < 1:1458179/91‑1 CGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATATTAATT < 1:1458098/91‑1 CGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATATTAATT < 1:1209901/91‑1 GAGATAAATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/312934‑313030‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccccGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGGCCCGCCATTATAACACTGTAGGTCCTACTATATTAATT < USA300TCH1516_ALE/313078‑312989 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |