BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 313030	173 (0.850)	10 (0.050)	6/146	NT	6.2%	intergenic (+83/+351)	bglA/rebM	Aryl‑phospho‑beta‑D‑glucosidase BglA/Demethylrebeccamycin‑D‑glucose O‑methyltransferase
*	?	USA300TCH1516_ALE	= 313078	146 (0.790)	10 (0.050)	6/146	NT	6.2%	intergenic (+131/+303)	bglA/rebM	Aryl‑phospho‑beta‑D‑glucosidase BglA/Demethylrebeccamycin‑D‑glucose O‑methyltransferase

Only 100 of 237 total aligned reads displayed.

AATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGT  >  USA300TCH1516_ALE/312940‑313120

aaTTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCC                                                                                            >  2:3866954‑M1/1‑91 (MQ=255)

aaTTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCC                                                                                            <  2:3046786‑M1/91‑1 (MQ=255)

       aaGGTATATTATAAGTATTTTGGTGTTAGTGCCCGAGACGTAAATTAATATTGTAGGACCTACAGTGTTATAATGGCGGTCCCCTAAcaca                                                                                     <  2:34670/91‑1 (MQ=255)

       aaGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGTGCCCCCAAcaca                                                                                     <  1:3054847/91‑1 (MQ=255)

       aaGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAAcaca                                                                                     >  2:1345775/1‑91 (MQ=255)

       aaGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAAcaca                                                                                     >  1:1460581/1‑91 (MQ=255)

        aGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACaa                                                                                    >  1:3655269/1‑91 (MQ=255)

        aGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACaa                                                                                    <  1:3527556/91‑1 (MQ=255)

        aGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACaa                                                                                    >  1:704145/1‑91 (MQ=255)

         ggTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACaaa                                                                                   >  1:3258619/1‑91 (MQ=255)

         ggTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACaaa                                                                                   >  1:1173821/1‑91 (MQ=255)

            atatTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGaa                                                                                >  1:3766965/1‑91 (MQ=255)

            atatTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGaa                                                                                <  2:1228883/91‑1 (MQ=255)

            atatTATAAGGATTTTAGGGTGAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGaa                                                                                <  2:2622714/91‑1 (MQ=255)

               ttatAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAAttt                                                                             >  1:3935307/1‑91 (MQ=255)

                tataAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTc                                                                            <  1:1748252/91‑1 (MQ=255)

                tataAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTc                                                                            >  1:981783/1‑91 (MQ=255)

                tataAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTc                                                                            <  1:2393787/91‑1 (MQ=255)

                  taAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGa                                                                          <  2:1551433/91‑1 (MQ=255)

                  taAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGa                                                                          <  1:1402030/91‑1 (MQ=255)

                    aGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTctttt                                                                        <  2:3757585/91‑5 (MQ=255)

                    aGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGaaa                                                                        <  2:497351/91‑1 (MQ=255)

                     gTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGaaaa                                                                       >  1:211564/1‑91 (MQ=255)

                     gTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGaaaa                                                                       <  1:906245/91‑1 (MQ=255)

                     gTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGaaaa                                                                       <  2:238155/91‑1 (MQ=255)

                       aTTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGa                                                                     >  2:1729760/1‑91 (MQ=255)

                       aTTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGa                                                                     <  1:2474572/91‑1 (MQ=255)

                       aTTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGa                                                                     >  1:3120103/1‑91 (MQ=255)

                       aTTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGa                                                                     >  2:2392770/1‑91 (MQ=255)

                       aTTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGa                                                                     >  1:2350868/1‑91 (MQ=255)

                       aTTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGa                                                                     >  2:780634/1‑91 (MQ=255)

                        ttttAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGaa                                                                    >  1:1034146/1‑91 (MQ=255)

                           tAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAAtt                                                                 >  1:14514/1‑91 (MQ=255)

                            aGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTc                                                                >  1:3725699/1‑91 (MQ=255)

                             gggTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCt                                                               <  2:1266342/91‑1 (MQ=255)

                             gggTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCt                                                               <  1:492413/91‑1 (MQ=255)

                              ggTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTa                                                              >  1:3887516/1‑91 (MQ=255)

                                ttAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACa                                                            <  1:1055868/91‑1 (MQ=255)

                                  agagCCCGAGACATCAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAgg                                                          >  2:3354349/1‑91 (MQ=255)

                                  agagCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAgg                                                          >  2:3077664/1‑91 (MQ=255)

                                   gagCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATATTGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGt                                                         <  1:3148130/91‑1 (MQ=255)

                                   gagCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTATACAGGt                                                         <  2:2497426/91‑1 (MQ=255)

                                    agCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTa                                                        <  2:3957438/91‑1 (MQ=255)

                                      cccGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAAt                                                      <  1:276142/91‑1 (MQ=255)

                                       ccGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATg                                                     >  1:1633401/1‑91 (MQ=255)

                                        cGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGc                                                    <  1:1825328/91‑1 (MQ=255)

                                         gagaCATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCa                                                   >  1:281366/1‑91 (MQ=255)

                                          agaCATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACTCAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCaa                                                  <  1:3342627/91‑1 (MQ=255)

                                          agaCATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCaa                                                  <  1:2611987/91‑1 (MQ=255)

                                             cATAAATGAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGtt                                               <  2:1644909/91‑1 (MQ=255)

                                              aTAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCgccaacttgcattacctgtagaatttcttttcgaaattctttgtgt                                              <  1:3901585‑M1/91‑47 (MQ=255)

                                              aTAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTg                                              <  2:3828233/91‑1 (MQ=255)

                                               tAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTgg                                             >  1:3507592/1‑91 (MQ=255)

                                                aaaTTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCgccaacttgcattacctgtagaatttcttttcgaaattctttgtgttg                                            <  1:134119‑M1/91‑49 (MQ=255)

                                                aaaTTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGc                                            <  2:836508/91‑1 (MQ=255)

                                                 aaTTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCg                                           <  1:1209901‑M2/91‑2 (MQ=255)

                                                 aaTTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCg                                           >  1:1864137‑M2/1‑90 (MQ=255)

                                                  aTTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCgccaacttgcattacctgtagaatttcttttcgaaattctttgtgttggg                                          <  1:2726965‑M1/91‑51 (MQ=255)

                                                  aTTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCgg                                          >  2:972833‑M2/1‑89 (MQ=255)

                                                  aTTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCgg                                          >  2:2382144‑M2/1‑89 (MQ=255)

                                                  aTTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCgg                                          >  2:973166‑M2/1‑89 (MQ=255)

                                                  aTTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCgg                                          >  1:1902012‑M2/1‑89 (MQ=255)

                                                  aTTAATATAGTAGGACCTACAGTGTTATAATG‑‑GGGCCCCgccaacttgcattacctgtagaatttcttttcgaaattctttgtgttggggg                                        <  1:1742071‑M1/91‑53 (MQ=255)

                                                     aaTATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggc                                       >  1:2652869‑M2/1‑86 (MQ=255)

                                                     aaTATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggc                                       >  1:2523763‑M2/1‑86 (MQ=255)

                                                      atatAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggcc                                      >  2:2904093‑M2/1‑85 (MQ=255)

                                                      atatAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggcc                                      <  2:787850‑M2/91‑7 (MQ=255)

                                                       tataGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggccc                                     <  2:1817558‑M2/91‑8 (MQ=255)

                                                        ataGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGcccc                                    >  2:1548596/1‑91 (MQ=255)

                                                        agagtggGACCTGCAGTGTGATAATGGCGGGCCCCCAACACAAAGAATTGCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGcccc                                    <  2:1101283/89‑1 (MQ=21)

                                                         tagtagGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggcacca                                   <  2:1495586‑M2/91‑10 (MQ=255)

                                                           gtagGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTTGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAac                                 >  1:611632/1‑91 (MQ=255)

                                                             agGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAacac                               >  2:2370701/1‑91 (MQ=255)

                                                             agGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAacac                               >  1:385472/1‑91 (MQ=255)

                                                             agGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAacac                               <  2:450905/91‑1 (MQ=255)

                                                              ggACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAAcaca                              >  1:1295335/1‑91 (MQ=255)

                                                                aCCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACaga                            <  2:1783926/91‑1 (MQ=255)

                                                                 ccTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGTCCCAACACagag                           <  1:3866954/91‑1 (MQ=255)

                                                                   tACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGaa                         >  2:2279181/1‑91 (MQ=255)

                                                                    aCAGTGTTATAATGGCGGGCCCCCGACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAaaaa                        <  2:2116466/91‑1 (MQ=255)

                                                                    aCAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGaaa                        >  1:553523/1‑91 (MQ=255)

                                                                    aCAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGaaa                        >  1:851310/1‑91 (MQ=255)

                                                                        tgtTATAATGGCGGGCCCCTAACACAAAGGATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGGAGCCCAAACACAGAGAAATTCg                    <  2:549988/91‑1 (MQ=21)

                                                                         gtTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACAAAGAGAAATTCGa                   >  2:3296742/1‑91 (MQ=255)

                                                                           tataATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGaaa                 >  2:2882437/1‑91 (MQ=255)

                                                                           tataATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGaaa                 >  2:220505/1‑91 (MQ=255)

                                                                            ataATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGaaaa                <  1:3919978/91‑1 (MQ=255)

                                                                              aaTGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGa              <  1:3351470/91‑1 (MQ=255)

                                                                              aaTGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGa              <  1:1095895/91‑1 (MQ=255)

                                                                                   cGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTc         >  2:2285028/1‑91 (MQ=255)

                                                                                    gggCCCCgccaacttgcattacctgtagaatttcttttcgaaattctttgtgttgggggcccgccattataacactgtaggtcctactata        <  1:2557129‑M1/91‑85 (MQ=255)

                                                                                     ggCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTa       >  1:3610331/1‑91 (MQ=255)

                                                                                     ggCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTa       <  1:1786763/91‑1 (MQ=255)

                                                                                      gCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTAc      <  1:2596195/91‑1 (MQ=255)

                                                                                        ccccAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAg    <  2:1984162/91‑1 (MQ=255)

                                                                                        ccccAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAg    >  2:183314/1‑91 (MQ=255)

                                                                                         ccgccaacttgcattacctgtagaatttcttttcgaaattctttgtgttgggggcccgccattataacactgtaggtcctactatattaat   >  1:3518059‑M1/1‑2 (MQ=255)

                                                                                         cccAACACAAACAATCGCGCAAAAAAATTCTACAGGTAATGCAAACTGGCGCGCCCCTAACACAGAGCACTTCGAAAAACAACTCTACAgg   >  2:3805765/1‑91 (MQ=255)

                                                                                          cgccaacttgcattacctgtagaatttcttttcgaaattctttgtgttgggggcccgccattataacactgtaggtcctactatattaatt  <  1:1458179‑M1/91‑91 (MQ=255)

                                                                                          ccAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGt  >  2:2764550/1‑91 (MQ=255)

AATTATAAAGGTATATTATAAGTATTTTAGGGTTAGAGCCCGAGACATAAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGT  >  USA300TCH1516_ALE/312940‑313120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.