BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 313030	173 (0.850)	10 (0.050)	6/146	NT	6.2%	intergenic (+83/+351)	bglA/rebM	Aryl‑phospho‑beta‑D‑glucosidase BglA/Demethylrebeccamycin‑D‑glucose O‑methyltransferase
*	?	USA300TCH1516_ALE	= 313078	146 (0.790)	10 (0.050)	6/146	NT	6.2%	intergenic (+131/+303)	bglA/rebM	Aryl‑phospho‑beta‑D‑glucosidase BglA/Demethylrebeccamycin‑D‑glucose O‑methyltransferase

Only 100 of 200 total aligned reads displayed.

AAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGAAAATATCATTT  >  USA300TCH1516_ALE/312988‑313168

aaaTTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGc                                                                                            <  2:836508/91‑1 (MQ=255)

 aaTTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCg                                                                                           <  1:1458179‑M2/91‑2 (MQ=255)

  aTTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCgg                                                                                          >  2:972833‑M2/1‑89 (MQ=255)

  aTTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCgg                                                                                          >  1:1902012‑M2/1‑89 (MQ=255)

  aTTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCgg                                                                                          >  2:2382245‑M2/1‑89 (MQ=255)

     aaTATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggc                                                                                       >  1:2652869‑M2/1‑86 (MQ=255)

      atatAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggcc                                                                                      >  2:2904093‑M2/1‑85 (MQ=255)

      atatAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggcc                                                                                      <  2:787850‑M2/91‑7 (MQ=255)

       tataGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggccc                                                                                     <  2:1817558‑M2/91‑8 (MQ=255)

        ataGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGcccc                                                                                    >  1:2530797/1‑91 (MQ=255)

        ataGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGcccc                                                                                    >  2:1548596/1‑91 (MQ=255)

        agagtggGACCTGCAGTGTGATAATGGCGGGCCCCCAACACAAAGAATTGCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGcccc                                                                                    <  2:1101283/89‑1 (MQ=21)

         tagtagGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggcacca                                                                                   <  2:1495586‑M2/91‑10 (MQ=255)

          agtagGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTTCAGGTAATGCAAGTTGGCGGGGCCCCaa                                                                                  >  2:1625163/1‑91 (MQ=255)

           gtagGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTTGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAac                                                                                 >  1:611632/1‑91 (MQ=255)

             agGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAacac                                                                               <  2:2244442/91‑1 (MQ=255)

             agGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAacac                                                                               <  2:450905/91‑1 (MQ=255)

             agGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAacac                                                                               >  2:2370565/1‑91 (MQ=255)

              ggACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAAcaca                                                                              >  1:1295335/1‑91 (MQ=255)

               gACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACag                                                                             >  1:2607586/1‑91 (MQ=255)

                aCCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACaga                                                                            <  1:1489623/91‑1 (MQ=255)

                 ccTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACagag                                                                           <  1:3931437/91‑1 (MQ=255)

                   tACAGTGTTATAATGGCGGGCCCCCAACACAAAGCATTTCGAAAAGAAATTCTACAGGTCATGCAAGTTGGCGGGGCCCCAACACAGAGaa                                                                         >  2:2279854/1‑91 (MQ=255)

                     cAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAAt                                                                       >  2:1217448/1‑91 (MQ=255)

                       gtgtTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTc                                                                     <  1:700755/91‑1 (MQ=255)

                        tgtTATAATGGCGGGCCCCTAACACAAAGGATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGGAGCCCAAACACAGAGAAATTCg                                                                    <  2:549988/91‑1 (MQ=21)

                        tgtTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACACAGAAATTCg                                                                    >  1:3777925/1‑91 (MQ=255)

                          ttATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGaa                                                                  <  1:1149319/91‑1 (MQ=255)

                            ataATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGaaaa                                                                <  1:3919978/91‑1 (MQ=255)

                             taATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAg                                                               >  2:2766078/1‑91 (MQ=255)

                              aaTGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGa                                                              >  2:2416824/1‑91 (MQ=255)

                              aaTGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGa                                                              <  1:1095895/91‑1 (MQ=255)

                              aaTGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGa                                                              <  1:3351089/91‑1 (MQ=255)

                                 ggCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAAt                                                           >  1:994356/1‑91 (MQ=255)

                                   cGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTc                                                         <  1:3628691/91‑1 (MQ=255)

                                     ggCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTa                                                       <  1:1786663/91‑1 (MQ=255)

                                      gCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTAc                                                      >  2:230101/1‑91 (MQ=255)

                                       cccccAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACa                                                     >  1:3862284/1‑91 (MQ=255)

                                        ccccAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAg                                                    <  2:1984162/91‑1 (MQ=255)

                                        ccccAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAg                                                    >  2:183314/1‑91 (MQ=255)

                                         cccAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggcccgccattataacactgtaggtcctactatattaat                                                   <  1:2726965‑M2/91‑42 (MQ=255)

                                         cccAACACAAACAATCGCGCAAAAAAATTCTACAGGTAATGCAAACTGGCGCGCCCCTAACACAGAGCACTTCGAAAAACAACTCTACAgg                                                   >  2:3805765/1‑91 (MQ=255)

                                           cAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggcccgccattataacactgtaggtcctactatattaattt                                                 <  1:1060179‑M2/91‑44 (MQ=255)

                                           cAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTa                                                 >  2:1710935/1‑91 (MQ=255)

                                            aaCACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTaa                                                >  1:3873001/1‑91 (MQ=255)

                                            aaCACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTaa                                                <  1:451119/91‑1 (MQ=255)

                                             acacAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggcccgccattataacactgtaggtcctactatattaatttat                                               <  1:3901585‑M2/91‑46 (MQ=255)

                                             acacAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAAt                                               >  1:1425672/1‑91 (MQ=255)

                                             acacAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAAt                                               >  2:960474/1‑91 (MQ=255)

                                             acacAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAAt                                               <  1:1670550/91‑1 (MQ=255)

                                              cacaAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggcccgccattataacactgtaggtcctactatattaatttatg                                              <  2:1854809‑M2/91‑47 (MQ=255)

                                              cacaAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATg                                              <  1:236599/91‑1 (MQ=255)

                                               acaAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggcccgccattataacactgtaggtcctactatattaatttatgt                                             <  2:977022‑M2/91‑48 (MQ=255)

                                               acaAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCggggcccgccattataacactgtaggtcctactatattaatttatgt                                             <  2:420174‑M2/91‑48 (MQ=255)

                                                caAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCa                                            <  1:2251491/91‑1 (MQ=255)

                                                caAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCa                                            >  2:2145637/1‑91 (MQ=255)

                                                  aaGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAg                                          <  2:377977/91‑1 (MQ=255)

                                                  aaGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAg                                          <  1:3764525/91‑1 (MQ=255)

                                                  aaGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTAGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAg                                          >  1:3329294/1‑91 (MQ=255)

                                                    gAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGtt                                        >  2:3542409/1‑91 (MQ=255)

                                                      aTTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTgg                                      <  1:889795/91‑1 (MQ=255)

                                                       tttCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTggg                                     >  1:1805110/1‑91 (MQ=255)

                                                       tttCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTggg                                     <  2:2791657/91‑1 (MQ=255)

                                                          cGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGaa                                  >  1:1250622/1‑91 (MQ=255)

                                                            aaaaGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAgg                                <  1:2902648/91‑1 (MQ=255)

                                                            aaaaGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAgg                                <  1:2902826/91‑1 (MQ=255)

                                                              aaGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGAc                              >  2:2691597/1‑91 (MQ=255)

                                                              aaGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGAc                              <  2:3137281/91‑1 (MQ=255)

                                                               aGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGCCa                             >  2:2516485/1‑91 (MQ=255)

                                                                 aaaTTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGa                           <  1:1791666/91‑1 (MQ=255)

                                                                    ttCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGaaat                        <  2:730305/91‑1 (MQ=255)

                                                                     tCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGaaata                       >  1:30281/1‑91 (MQ=255)

                                                                      cTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGaaataa                      >  1:3453595/1‑91 (MQ=255)

                                                                        aCAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGaaataaat                    >  1:1075972/1‑91 (MQ=255)

                                                                        aCAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGaaataaat                    >  1:3580331/1‑91 (MQ=255)

                                                                         cAGGTAATGCAAGTTGGCGGGGCCCTAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAAtt                   <  1:3689384/91‑1 (MQ=255)

                                                                         cAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAAtt                   >  1:1729066/1‑91 (MQ=255)

                                                                           ggTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAAtttt                 >  1:2489767/1‑91 (MQ=255)

                                                                           ggTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAAtttt                 >  1:3226701/1‑91 (MQ=255)

                                                                             tAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGc               <  1:551774/91‑1 (MQ=255)

                                                                             tAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGc               <  1:3729138/91‑1 (MQ=255)

                                                                             tAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGc               <  2:1650235/91‑1 (MQ=255)

                                                                                tGCATGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGaa            >  2:1684959/1‑91 (MQ=255)

                                                                                 gCAAGGTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGaaa           <  2:88788/91‑1 (MQ=255)

                                                                                  cAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACCGAAATCCATTCTGCGcaaa          >  1:2560231/1‑91 (MQ=17)

                                                                                  cAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGaaaa          <  1:395562/91‑1 (MQ=255)

                                                                                   aaGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGAAAat         <  1:809500/91‑1 (MQ=255)

                                                                                   aaGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGAAAat         <  1:2764550/91‑1 (MQ=255)

                                                                                     gTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGAAAatat       >  2:1725707/1‑91 (MQ=255)

                                                                                      ttGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGAAAATATc      <  1:2934222/91‑1 (MQ=255)

                                                                                       tGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGAAAATATCa     <  2:1459113/91‑1 (MQ=255)

                                                                                       tGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGAAAATATCa     <  1:2004764/91‑1 (MQ=255)

                                                                                       tGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGAAAATATCa     <  1:2248549/91‑1 (MQ=255)

                                                                                       tGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGAAAATATCa     >  2:593771/1‑91 (MQ=255)

                                                                                       tGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGAAAATATCa     <  2:2381302/91‑1 (MQ=255)

                                                                                         gCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGAAAATATCAtt   >  1:350574/1‑91 (MQ=255)

                                                                                          cGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGAAAATATCAttt  >  1:3146158/1‑91 (MQ=255)

                                                                                          cGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGAAAATATCAttt  >  1:3864582/1‑91 (MQ=255)

                                                                                          cGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGAAAATATCAttt  >  1:880793/1‑91 (MQ=255)

                                                                                          cGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGAAAATATCAttt  >  1:880912/1‑91 (MQ=255)

AAATTAATATAGTAGGACCTACAGTGTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGAAGGACAGAAATAAATTTTGCGAAAATATCATTT  >  USA300TCH1516_ALE/312988‑313168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.