| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 326015 = | 192 (0.940) | 25 (0.140) | 13/142 | NT | 12.5% | intergenic (‑19/+49) | USA300HOU_RS01460/USA300HOU_RS01465 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 326051 = | 181 (1.000) | intergenic (‑55/+13) | USA300HOU_RS01460/USA300HOU_RS01465 | hypothetical protein/hypothetical protein | |||||
AAAATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/326113‑326015‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCAC > USA300TCH1516_ALE/326051‑326140 AAAATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTC < 1:1032379/91‑1AAAATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTC > 1:854788/1‑91AAAATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTC < 1:890780/91‑1AAAATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTC > 1:3305646/1‑91AAAATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTC < 1:3225348/91‑1 AAATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCA < 2:2480233/91‑1 AATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAA > 1:1660895/1‑91 TGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATC < 1:1705622/91‑1 TGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATC < 1:2123019/91‑1 GGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCT < 1:1095232/91‑1 GGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCT > 2:3395395/1‑91 GCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTT > 1:3093929/1‑91 GCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTT > 1:3093890/1‑91 GCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTT < 2:1451832/91‑1 GCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTT > 2:1591469/1‑91 GCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTT > 2:1934503/1‑91 GCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTT < 2:2456052/91‑1 CGGCAAAATGTTTGAATCAATTTTAAAAGAGGCATCTACGTAACTAAAATATAAAAATAAGAGTGGAAGGTCATCTTGCCTTTCAATCTTA < 2:1839005/91‑1 CGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTA > 1:2203065/1‑91 CGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTA < 1:2118622/91‑1 CGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTA > 1:841151/1‑91 GGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTAT < 1:1941399/91‑1 ATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAAC > 2:3041983/1‑91 ATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAT > 1:5760/1‑91 AAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTT > 1:987117/1‑91 AAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTGTTATATTTTAGTTAGTTAGATGCCTTTTTTAAAATTGATTCACACATTT > 1:2566561/1‑91 AAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTATAATTGATTCAAACATTTT > 2:2655430/1‑91 AAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTT > 1:1226778/1‑91 AATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGC > 1:3925968/1‑91 AATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATCTTTATATTTTAGTCATTTAGATGCCTTTTTTAAAATTGATTCAAACAGTTTGC > 1:3677067/1‑91 ATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCC > 1:1788849/1‑91 ATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTCTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCC > 2:380976/1‑91 AAGATTGGAAGGTTATCTTGCCTTTCAACCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCatc > 2:1030941/1‑88 AAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGC > 1:459252/1‑91 GATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCA > 2:436861/1‑91 TTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGTCGCCATT > 1:986859/1‑91 TTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATT > 2:687937/1‑91 GGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTT > 2:2933390/1‑91 GGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTT > 2:2933499/1‑91 GGAAGGTCATCTTGCCTTTCAATCTTATTTTTATACTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTT > 2:2611082/1‑91 GGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTC > 1:3632976/1‑91 GTCATCTTGCCTTTCAATCTTATTTTTATATTTTTTTTATTTAGCTGCCTTTTTTACAATTGATTCAACCATTTTGCCGCCATTTTTTTCG > 2:2299786/1‑91 GTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCG > 2:1831788/1‑91 GTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCG > 2:1830604/1‑91 CATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGAT > 1:3011212/1‑91 CATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGAT > 1:2761634/1‑91 CATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGAT > 1:3010166/1‑91 ccagTCTTACTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAA < 1:3556153/87‑1 ccacTCTTACTTTTATATTTTAGTTATGTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAA < 1:3556189/87‑1 CAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAG < 2:3149938/91‑1 CAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAG > 2:1463511/1‑91 CAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAG < 2:3150365/91‑1 TCTTATTTTTATATTTTAGTTATTTCGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTT < 1:3682018/91‑1 TCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTT < 1:2932257/91‑1 TCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTT < 2:5309/91‑1 CTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTT < 2:1061970/91‑1 TTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTTATTTTTATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTT > 2:2746443/1‑91 TTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTT > 2:224770/1‑91 TTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTT < 1:1795064/91‑1 TTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTT < 1:1233960/91‑1 TTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTT < 1:1795118/91‑1 TTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTT > 2:1566335/1‑91 TTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTT > 1:3074233/1‑91 TTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTT < 1:1024264/91‑1 TATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTC > 2:1785477/1‑91 TATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTC < 2:3018824/91‑1 TATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTC > 2:1263750/1‑91 TATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTC > 2:3821414/1‑91 TATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTC < 2:3822015/91‑1 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTTTTTTTTTTTTAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCA > 2:701868/1‑91 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACGTTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCA < 2:668130/91‑1 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCA > 2:2053226/1‑91 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCA < 1:3379345/91‑1 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCA < 1:2691957/91‑1 TTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCCAGTTTTTCAC > 2:835024/1‑91 TTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCAC < 1:1578597/91‑1 TTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCAC > 2:1152906/1‑91 TTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCAC < 2:3247968/91‑1 TTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCAC < 2:1756660/91‑1 TTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCAC < 2:1757049/91‑1 TTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCAC > 2:2151998/1‑91 AAAATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/326113‑326015‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCAC > USA300TCH1516_ALE/326051‑326140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |