BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	326015 =	192 (0.940)	25 (0.140)	13/142	NT	12.5%	intergenic (‑19/+49)	USA300HOU_RS01460/USA300HOU_RS01465	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	326051 =	181 (1.000)	25 (0.140)	13/142	NT	12.5%	intergenic (‑55/+13)	USA300HOU_RS01460/USA300HOU_RS01465	hypothetical protein/hypothetical protein

Only 100 of 299 total aligned reads displayed.

AGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCACG  >  USA300TCH1516_ALE/325961‑326141

gcaaactgtttgaatcaattttaaaaaaggcatctaaatgactaaaatataaagATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtt                                                                                            >  1:3677067‑M1/55‑91 (MQ=255)

agagTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtt                                                                                            <  2:1943467/91‑1 (MQ=255)

agagTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTCCCAATCTTAtt                                                                                            >  1:3588374/1‑91 (MQ=255)

 gagTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttt                                                                                           >  1:368244/1‑91 (MQ=255)

  agTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtttt                                                                                          >  1:911010/1‑91 (MQ=255)

  agTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtttt                                                                                          <  2:1354031/91‑1 (MQ=255)

  aaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtttt                                                                                          >  1:1226778‑M1/53‑91 (MQ=255)

   gTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttttt                                                                                         >  1:1304600/1‑91 (MQ=255)

   aaatgtgtgaatcaattttaaaaaaggcatctaactaactaaaatataacaATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttttt                                                                                         >  1:2566561‑M1/52‑91 (MQ=255)

    tGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTta                                                                                        <  1:1456504/91‑1 (MQ=255)

     ggTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTtat                                                                                       <  1:323572/91‑1 (MQ=255)

     atgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTtat                                                                                       >  1:5760‑M1/50‑91 (MQ=255)

      gTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTtata                                                                                      <  2:1696699/91‑1 (MQ=255)

       tAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTatat                                                                                     >  2:2289690/1‑91 (MQ=255)

        aGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATAtt                                                                                    <  1:2632903/91‑1 (MQ=255)

         gATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATAttt                                                                                   <  1:3929948/91‑1 (MQ=255)

           tGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTa                                                                                 <  1:2571630/91‑1 (MQ=255)

            gCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAg                                                                                <  1:270223/91‑1 (MQ=255)

             cGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGt                                                                               <  1:2877243/91‑1 (MQ=255)

             cGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGt                                                                               <  1:889464/91‑1 (MQ=255)

               aaaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTa                                                                             <  2:2368042/91‑1 (MQ=255)

               aaaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTa                                                                             >  1:1609532/1‑91 (MQ=255)

               aaaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTa                                                                             >  2:3277032/1‑91 (MQ=255)

               aaaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACATTCCAATCTTATTTTTATATTTTAGTTa                                                                             >  2:3041749/1‑91 (MQ=255)

                aaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTAt                                                                            >  2:2636349/1‑91 (MQ=255)

                 aCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTAtt                                                                           >  2:948970/1‑91 (MQ=255)

                    aaTGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAg                                                                        <  1:355716/91‑1 (MQ=255)

                       gTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATg                                                                     <  2:3117491/91‑1 (MQ=255)

                        tATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGc                                                                    >  1:2479262/1‑91 (MQ=255)

                         aTTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGcc                                                                   >  1:1695146/1‑91 (MQ=255)

                         aTTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGcc                                                                   >  2:2163502/1‑91 (MQ=255)

                           tgttgtCATTTAACCGCTCCTCCGCTGATAGGATTGAAAGGCAGGATGACTTTCGAATCTTATTTTTATATTTTAGTTATTTAGATGCCtt                                                                 <  2:3679089/91‑1 (MQ=255)

                           tGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCtt                                                                 <  1:1044987/91‑1 (MQ=255)

                            gTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCttt                                                                <  2:2144489/91‑1 (MQ=255)

                             ttttCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGCTGACCTTCCAATCTTATTTTTATCTTTTCGTTATTTAGCTGCCtttt                                                               >  2:159556/1‑91 (MQ=255)

                              tttCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCttttt                                                              <  1:345138/91‑1 (MQ=255)

                              tttCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCttttt                                                              <  1:2335830/91‑1 (MQ=255)

                              tttCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCttttt                                                              <  1:2683938/91‑1 (MQ=255)

                                tCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTa                                                            >  1:645319/1‑91 (MQ=255)

                                 cATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTaa                                                           >  1:2010797/1‑91 (MQ=255)

                                    ttAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAAt                                                        >  1:706621/1‑91 (MQ=255)

                                     tAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAAtt                                                       <  2:3728128/91‑1 (MQ=255)

                                        ccACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGAt                                                    <  2:3259826/91‑1 (MQ=255)

                                           ctcctcCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCa                                                 >  2:2871008/1‑91 (MQ=255)

                                           ctcctcCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAGTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCa                                                 >  1:3134441/1‑91 (MQ=255)

                                            tcctccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCaa                                                <  1:1750939/91‑1 (MQ=255)

                                               tccAATGATAAGATTGAGAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACa                                             <  2:2938913/91‑1 (MQ=255)

                                               tccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACa                                             >  1:1881495/1‑91 (MQ=255)

                                               tccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACa                                             >  2:3839575/1‑91 (MQ=255)

                                                ccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAt                                            >  1:1276406/1‑91 (MQ=255)

                                                 cAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAtt                                           <  1:2122849/91‑1 (MQ=255)

                                                 cAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAtt                                           >  1:3732337/1‑91 (MQ=255)

                                                 cAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAtt                                           <  2:2258298/91‑1 (MQ=255)

                                                  aaaaataagattggaaggtcatcttgcctttcaatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAttt                                          >  1:987117‑M2/41‑91 (MQ=255)

                                                  aaTGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAttt                                          >  1:1722476/1‑91 (MQ=255)

                                                   aaaataagattggaaggtcatcttgcctttcaatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTATAATTGATTCAAACAtttt                                         >  2:2655430‑M2/40‑91 (MQ=255)

                                                   aTGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAtttt                                         >  1:489013/1‑91 (MQ=255)

                                                     gATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgc                                       >  2:1192057/1‑91 (MQ=255)

                                                     gATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgc                                       >  1:1642586/1‑91 (MQ=255)

                                                      ataagattggaaggtcatcttgcctttcaatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgcc                                      >  1:1788849‑M2/37‑91 (MQ=255)

                                                      ataagattggaaggtcatcttgcctttcaatcttatTTTTATATTCTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgcc                                      >  2:380976‑M2/37‑91 (MQ=255)

                                                       TAAGATTGAAAGGCAAGATGACCTTCCACTCTTATTTTTATATTTTAGTTACGTAGATGCCTCTTTTAAAATTGATTCAAACATTTTgccg                                     <  2:1839005‑M1/91‑1 (MQ=255)

                                                       TAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccg                                     >  1:2203065‑M1/1‑91 (MQ=255)

                                                        AAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccgc                                    <  2:2456052‑M1/91‑1 (MQ=255)

                                                        AAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccgc                                    >  2:1934503‑M1/1‑91 (MQ=255)

                                                        AAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccgc                                    >  1:3093890‑M1/1‑91 (MQ=255)

                                                         AGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccgcc                                   <  1:1095232‑M1/91‑1 (MQ=255)

                                                         AGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccgcc                                   >  2:3395395‑M1/1‑91 (MQ=255)

                                                          gattggaaggtcatcttgcctttcaatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCa                                  >  2:436861‑M2/33‑91 (MQ=255)

                                                            ttggaaggtcatcttgcctttcaatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAtt                                >  2:687937‑M2/31‑91 (MQ=255)

                                                              GAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAtttt                              >  1:3305646‑M1/1‑91 (MQ=255)

                                                              GAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAtttt                              >  1:854788‑M1/1‑91 (MQ=255)

                                                                 aGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAttttttt                           <  1:3541952/91‑1 (MQ=255)

                                                                 aGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAttttttt                           >  1:1172065/1‑91 (MQ=255)

                                                                  ggCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTc                          >  1:980966/1‑91 (MQ=255)

                                                                   gCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCg                         >  1:1824870/1‑91 (MQ=255)

                                                                    cAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGa                        >  1:2654996/1‑91 (MQ=255)

                                                                    cAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGa                        <  2:2798711/91‑1 (MQ=255)

                                                                     catcttgcctttcaatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGAt                       >  1:2761634‑M2/22‑91 (MQ=255)

                                                                     catcttgcctttcaatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGAt                       >  1:3010166‑M2/22‑91 (MQ=255)

                                                                     aaGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGAt                       <  1:3820954/91‑1 (MQ=255)

                                                                       gATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGAttt                     <  2:1499601/91‑1 (MQ=255)

                                                                        aTGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTATAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTc                    >  2:591096/1‑91 (MQ=255)

                                                                        aTGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTc                    >  2:2554962/1‑91 (MQ=255)

                                                                            ccTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCtttt                >  2:1426864/1‑91 (MQ=255)

                                                                             cTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCttttt               >  1:3895386/1‑91 (MQ=255)

                                                                                ccAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCaa            <  2:523043/91‑1 (MQ=255)

                                                                                ccAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCaa            <  1:1516753/91‑1 (MQ=255)

                                                                                 caatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAg           <  2:3150365‑M2/82‑1 (MQ=255)

                                                                                 caatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAg           >  2:1463511‑M2/10‑91 (MQ=255)

                                                                                     cttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGtttt       <  2:1061970‑M2/86‑1 (MQ=255)

                                                                                      ttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGttttt      >  1:3074233‑M2/5‑91 (MQ=255)

                                                                                      ttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGttttt      <  1:1024264‑M2/87‑1 (MQ=255)

                                                                                      ttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGttttt      <  1:1795064‑M2/87‑1 (MQ=255)

                                                                                      ttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGttttt      >  2:1566335‑M2/5‑91 (MQ=255)

                                                                                       tatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTc     >  2:1785477‑M2/4‑91 (MQ=255)

                                                                                        atTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCa    >  2:2053226‑M2/3‑91 (MQ=255)

                                                                                         tTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCAc   <  1:1578597‑M2/90‑1 (MQ=255)

                                                                                         tTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCAc   <  2:1756660‑M2/90‑1 (MQ=255)

                                                                                         tTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCAc   >  2:1152906‑M2/2‑91 (MQ=255)

AGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCACG  >  USA300TCH1516_ALE/325961‑326141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.