| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 326023 | 194 (0.950) | 22 (0.120) | 11/142 | NT | 11.1% | intergenic (‑27/+41) | USA300HOU_RS01460/USA300HOU_RS01465 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 326041 | 181 (1.000) | intergenic (‑45/+23) | USA300HOU_RS01460/USA300HOU_RS01465 | hypothetical protein/hypothetical protein | |||||
TAAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/325925‑326023‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataagattgGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATTG < USA300TCH1516_ALE/326041‑325952 TAAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGA > 2:753260/1‑91TAAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGA > 1:2410821/1‑91 AAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGAT > 2:3737257/1‑91 AATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATTCGAAACAAATGTATTGTTTTCATTTAACCACTCCTTCAATGATA > 2:1755229/1‑91 AATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATA < 2:3707211/91‑1 ATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAA > 1:2768800/1‑91 ATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAA > 1:2767695/1‑91 ATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAA > 1:2484521/1‑91 ATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAA > 1:2434052/1‑91 TAGATAATCAAATACCACTTTTTTAATTTATTAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAt > 2:1050019/1‑90 TAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCCCTCCTCCAATGACAAG > 2:3784469/1‑91 TAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAG < 2:131291/91‑1 TAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAG < 2:1467009/91‑1 TAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAG < 1:2110612/91‑1 TAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAG > 1:50336/1‑91 AGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGA > 1:31420/1‑91 AGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGA > 1:717233/1‑91 AGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGA < 2:1429370/91‑1 GATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGAT > 2:2892208/1‑91 ATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATT < 2:2541806/91‑1 ATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATT > 1:3274624/1‑91 TAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTG > 1:68341/1‑91 TAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTG > 1:1339062/1‑91 TAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTG > 1:3113241/1‑91 TAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTG > 1:1339151/1‑91 TAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTG > 1:1339223/1‑91 TTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGC < 1:2134472/91‑1 TCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTT < 2:2848439/91‑1 AATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCA < 1:762964/91‑1 AATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCA < 1:757158/91‑1 ATAAAAAAGAGTGGTAGATGCGAAACAAATGTAATGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAA < 1:3511251/91‑1 TAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAAT < 2:2632360/91‑1 TAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAAT < 2:3562447/91‑1 AAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATC < 1:3100083/91‑1 AAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATC < 1:888805/91‑1 AAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATC < 1:887988/91‑1 AAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATC < 2:432785/91‑1 AAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATC < 1:3099369/91‑1 AAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATC < 1:3298118/91‑1 AAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATC < 1:3099396/91‑1 AAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATCT < 1:1799756/91‑1 AAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATCT < 1:1477820/91‑1 AAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTGTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATCT < 1:1201891/91‑1 AAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTA < 1:488650/91‑1 AAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTAT < 1:2370713/91‑1 ATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAG < 2:2417512/91‑1 AAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTT < 1:3632548/91‑1 AAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTT < 1:3632498/91‑1 ATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTT < 1:1685159/91‑1 ATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTT < 1:2362467/91‑1 aAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTT < 2:942910/90‑1 AGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTT > 1:3490969/1‑91 AGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTT > 2:1257789/1‑91 AGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGCAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTT > 1:3422960/1‑91 GATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTT > 1:278804/1‑91 GATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTT < 2:2673203/91‑1 GATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTT > 2:1982655/1‑91 GATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTT > 2:1676562/1‑91 GATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATCTGTTTCGCATCTACCACTCTTTTTT > 2:3852565/1‑91 ATTGGAAGGTCATCGTGCCTTGAAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTA < 2:2709282/91‑1 TTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTAT < 1:2071247/91‑1 TTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTAT < 1:2071050/91‑1 TGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATT < 1:1993532/91‑1 GGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACTATACATTTGTTTCGCATCTACCACTCTTTTTTATTG < 2:2803986/91‑1 GGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATTG < 2:3654214/91‑1 TAAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/325925‑326023‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataagattgGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATTG < USA300TCH1516_ALE/326041‑325952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |