BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 326023	194 (0.950)	22 (0.120)	11/142	NT	11.1%	intergenic (‑27/+41)	USA300HOU_RS01460/USA300HOU_RS01465	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 326041	181 (1.000)	22 (0.120)	11/142	NT	11.1%	intergenic (‑45/+23)	USA300HOU_RS01460/USA300HOU_RS01465	hypothetical protein/hypothetical protein

Only 100 of 337 total aligned reads displayed.

TAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTT  >  USA300TCH1516_ALE/325933‑326113

tAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTG                                                                                            >  1:1339151‑M1/1‑91 (MQ=255)

tAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTG                                                                                            >  1:68341‑M1/1‑91 (MQ=255)

cttgaaaaagaaatcgaaaaaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTg                                                                                            <  2:3149938‑M1/9‑1 (MQ=255)

   tCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGaaa                                                                                         >  2:1248724/1‑91 (MQ=255)

   tCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGaaa                                                                                         >  1:783579/1‑91 (MQ=255)

   tCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGaaa                                                                                         >  1:1194207/1‑91 (MQ=255)

        tACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCaa                                                                                    >  2:2659440/1‑91 (MQ=255)

         aCCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAg                                                                                   <  1:3342060/91‑1 (MQ=255)

         aCCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAg                                                                                   <  1:162084/91‑1 (MQ=255)

          ccACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGTAAGGCAAGa                                                                                  >  2:24577/1‑91 (MQ=255)

          ccACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGa                                                                                  >  2:1352501/1‑91 (MQ=255)

            atcgaaaaaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATg                                                                                >  1:2761634‑M1/71‑91 (MQ=255)

            aCTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATg                                                                                >  1:1440889/1‑91 (MQ=255)

            aCTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATg                                                                                >  1:2744403/1‑91 (MQ=255)

              cgaaaaaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGAc                                                                              >  2:1831788‑M1/69‑91 (MQ=255)

                  tCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGgaaggtcatcttgccttt                                                                          <  2:2848439‑M1/91‑19 (MQ=255)

                   cAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCc                                                                         <  2:3654214‑M2/91‑2 (MQ=255)

                   aaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaagtataaaaATAAGATTGAAAGGCAAGATGACCTTcc                                                                         >  2:2611082‑M1/64‑91 (MQ=255)

                   aaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTcc                                                                         >  2:2933390‑M1/64‑91 (MQ=255)

                    aaTAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGgaaggtcatcttgcctttca                                                                        <  1:757158‑M1/91‑21 (MQ=255)

                     aatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCaa                                                                       >  2:687937‑M1/62‑91 (MQ=255)

                     aatggcgacaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCaa                                                                       >  1:986859‑M1/62‑91 (MQ=255)

                     aTAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCcaa                                                                       <  1:2071247‑M2/91‑4 (MQ=255)

                       aaaaaaGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGgaaggtcatcttgcctttcaatc                                                                     <  1:888805‑M1/91‑24 (MQ=255)

                         gcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCAATCtt                                                                   >  1:459252‑M1/58‑91 (MQ=255)

                         gatgcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGGTTGAAAGGCAAGATAACCTTCCAATCtt                                                                   >  2:1030941‑M1/58‑91 (MQ=255)

                          aaaGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCcaatcttt                                                                  <  2:942910‑M2/91‑9 (MQ=255)

                           ggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactagaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAt                                                                 >  2:380976‑M1/56‑91 (MQ=255)

                           ggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAt                                                                 >  1:1788849‑M1/56‑91 (MQ=255)

                           aaGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGgaaggtcatcttgcctttcaatcttat                                                                 <  1:2370713‑M1/91‑28 (MQ=255)

                            agagTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtt                                                                <  2:1948755/91‑1 (MQ=255)

                            agagTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTCCCAATCTTAtt                                                                >  1:3588374/1‑91 (MQ=255)

                             gagTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttt                                                               >  1:368244/1‑91 (MQ=255)

                               gTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttttt                                                             >  1:3878638/1‑91 (MQ=255)

                               aaatgtgtgaatcaattttaaaaaaggcatctaactaactaaaatataacaATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttttt                                                             >  1:2566561‑M1/52‑91 (MQ=255)

                                 ggTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTtat                                                           <  1:1057620/91‑1 (MQ=255)

                                 ggTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTtat                                                           <  1:323572/91‑1 (MQ=255)

                                 atgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTtat                                                           >  1:5760‑M1/50‑91 (MQ=255)

                                   tAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTatat                                                         >  2:2289690/1‑91 (MQ=255)

                                    aGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATAtt                                                        >  1:1291298/1‑91 (MQ=255)

                                          gAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGtt                                                  >  1:1688722/1‑91 (MQ=255)

                                           aaaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGgaaggtcatcttgcctttcaatcttatcattggaggagtggtt                                                 <  1:3632548‑M1/91‑44 (MQ=255)

                                           aaaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTa                                                 <  2:2368042/91‑1 (MQ=255)

                                           aaaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTa                                                 >  2:3863734/1‑91 (MQ=255)

                                           aaaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTa                                                 >  2:3277032/1‑91 (MQ=255)

                                           aaaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACATTCCAATCTTATTTTTATATTTTAGTTa                                                 >  2:3041749/1‑91 (MQ=255)

                                            aaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTAt                                                >  2:2636349/1‑91 (MQ=255)

                                            aaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTAt                                                <  1:875650/91‑1 (MQ=255)

                                               aaaTGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTa                                             >  1:2574564/1‑91 (MQ=255)

                                                aaTGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAg                                            <  1:355716/91‑1 (MQ=255)

                                                 aTGTATTGTTTTCATTTAACCGCTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGa                                           <  2:466447/91‑1 (MQ=255)

                                                  tGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGAt                                          >  2:2801197/1‑91 (MQ=255)

                                                    tATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGc                                        <  1:2646590/91‑1 (MQ=255)

                                                    tATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGc                                        >  1:2479262/1‑91 (MQ=255)

                                                     aTTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGcc                                       >  2:2163502/1‑91 (MQ=255)

                                                       tGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCtt                                     <  1:3011491/91‑1 (MQ=255)

                                                        gTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCttt                                    <  1:1223918/91‑1 (MQ=255)

                                                         ttttCATTTAACCACTCCTCCAATGATAACATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCtttt                                   >  2:3445414/1‑91 (MQ=255)

                                                          tttCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCttttt                                  <  1:2335830/91‑1 (MQ=255)

                                                          tttCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCttttt                                  <  1:2683938/91‑1 (MQ=255)

                                                             cATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTaa                               >  1:2008146/1‑91 (MQ=255)

                                                             cATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTaa                               >  2:1537854/1‑91 (MQ=255)

                                                              aTTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTaaa                              <  2:1182067/91‑1 (MQ=255)

                                                              aTTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTaaa                              <  2:1756515/91‑1 (MQ=255)

                                                               tttAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTaaaa                             <  1:2824678/91‑1 (MQ=255)

                                                                ttAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAAt                            >  2:1984797/1‑91 (MQ=255)

                                                                 tAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAAtt                           <  2:3728128/91‑1 (MQ=255)

                                                                    ccACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGAt                        >  1:1826042/1‑91 (MQ=255)

                                                                    ccACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGAt                        <  2:3259826/91‑1 (MQ=255)

                                                                       ctcctcCAATGATAAGATTGAAAGGCAAGATGACCTTCcaatcttatcattggaggagtggttaaatgaaaacaatacatttgtttcgcat                     <  2:2417512‑M2/91‑54 (MQ=255)

                                                                       ctcctcCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAGTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCa                     >  1:3134441/1‑91 (MQ=255)

                                                                        tcctccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCaa                    >  1:1522713/1‑91 (MQ=255)

                                                                        tcctccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCaa                    >  1:1752632/1‑91 (MQ=255)

                                                                           tccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACa                 >  1:1107624/1‑91 (MQ=255)

                                                                             cAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAtt               >  2:1887510/1‑91 (MQ=255)

                                                                             cAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAtt               <  2:2258298/91‑1 (MQ=255)

                                                                             cAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAtt               >  1:3732337/1‑91 (MQ=255)

                                                                              aaTGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAttt              >  1:1722476/1‑91 (MQ=255)

                                                                               aTGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAtttt             >  1:489013/1‑91 (MQ=255)

                                                                                  ATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgcc          <  1:1941399‑M1/91‑1 (MQ=255)

                                                                                   TAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccg         >  1:2203065‑M1/1‑91 (MQ=255)

                                                                                    AAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccgc        >  1:3093890‑M1/1‑91 (MQ=255)

                                                                                    AAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccgc        <  2:1451832‑M1/91‑1 (MQ=255)

                                                                                     aGATTGgaaggtcatcttgcctttcaatcttatcattggaggagtggttaaatgaaaacaatacatttgtttcgcatctaccactcttttt       >  1:3490969‑M1/1‑6 (MQ=255)

                                                                                     aGATTGAAAGGCAAGATGACCTTCcaatcttatcattggaggagtggttaaatgaaaacaatacatttgtttcgcatctaccactcttttt       <  1:1477820‑M2/91‑68 (MQ=255)

                                                                                      gATTGgaaggtcatcttgcctttcaatcttatcattggaggagtggttaaatgaaaacaatacatttgtttcgcatctaccactctttttt      >  2:1676562‑M1/1‑5 (MQ=255)

                                                                                      gATTGAAAGGCAAGATGACCTTCcaatcttatcattggaggagtggttaaatgaaaacaatacatttgtttcgcatctaccactctttttt      <  2:432785‑M2/91‑69 (MQ=255)

                                                                                      gATTGAAAGGCAAGATGACCTTCcaatcttatcattggaggagtggttaaatgaaaacaatacatttgtttcgcatctaccactctttttt      <  1:3100083‑M2/91‑69 (MQ=255)

                                                                                      gATTGAAAGGCAAGATGACCTTCcaatcttatcattggaggagtggttaaatgaaaacaatacatttgtttcgcatctaccactctttttt      <  1:3099369‑M2/91‑69 (MQ=255)

                                                                                      gATTGAAAGGCAAGATGACCTTCcaatcttatcattggaggagtggttaaatgaaaacaatacatttgtttcgcatctaccactctttttt      <  1:3298118‑M2/91‑69 (MQ=255)

                                                                                      GATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCa      <  1:2123019‑M1/91‑1 (MQ=255)

                                                                                       aTTGgaaggtcatcgtgccttgaaatcttatcattggaggagtggttaaatgaaaacaatacatttgtttcgcatctaccactctttttta     <  2:2709282‑M1/91‑88 (MQ=255)

                                                                                       aTTGAAAGGCAAGATGACCTTCcaatcttatcattggaggagtggttaaatgaaaacaatacatttgtttcgcatctaccactctttttta     <  2:3562447‑M2/91‑70 (MQ=255)

                                                                                        ttGgaaggtcatcttgcctttcaatcttatcattggaggagtggttaaatgaaaacaatacatttgtttcgcatctaccactcttttttat    <  1:2071050‑M1/91‑89 (MQ=255)

                                                                                        ttGAAAGGCAAGATGACCTTCcaatcttatcattggaggagtggttaaatgaaaacattacatttgtttcgcatctaccactcttttttat    <  1:3511251‑M2/91‑71 (MQ=255)

                                                                                        TTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAtt    >  1:1660895‑M1/1‑91 (MQ=255)

                                                                                         tGAAAGGCAAGATGACCTTCcaatcttatcattggaggagtggttaaatgaaaacaatacatttgtttcgcatctaccactcttttttatt   <  1:762964‑M2/91‑72 (MQ=255)

                                                                                          GAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAtttt  <  1:890780‑M1/91‑1 (MQ=255)

                                                                                          GAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAtttt  >  1:854788‑M1/1‑91 (MQ=255)

                                                                                          GAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAtttt  <  1:1032379‑M1/91‑1 (MQ=255)

TAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTT  >  USA300TCH1516_ALE/325933‑326113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.