| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 329211 | 178 (0.870) | 18 (0.100) | 8/140 | NT | 10.4% | intergenic (+79/+64) | USA300HOU_RS01475/ssaA2_1 | hypothetical protein/Staphylococcal secretory antigen ssaA2 |
| ? | USA300TCH1516_ALE | = 329244 | 156 (0.880) | intergenic (+112/+31) | USA300HOU_RS01475/ssaA2_1 | hypothetical protein/Staphylococcal secretory antigen ssaA2 | |||||
GCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/329112‑329211‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgacc‑aGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTAC < USA300TCH1516_ALE/329244‑329155 GCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATA > 2:874207/1‑91 ctgCAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAA > 2:2826417/4‑91 CTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAA < 1:3850025/91‑1 ACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAG > 2:625223/1‑91 ACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAG < 2:1761250/91‑1 CAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGC < 1:2728137/91‑1 CAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGC < 2:2991437/91‑1 AATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATCCAAAATAAAGCG < 1:3038181/91‑1 AATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCG < 2:123197/91‑1 AATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCG < 1:904458/91‑1 ATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGA > 2:2194157/1‑91 ATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGA < 2:1200285/91‑1 ATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGA > 1:2715624/1‑91 TTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGAC < 2:2970984/91‑1 TTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGAC < 2:3278875/91‑1 TATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC < 2:3240407/91‑1 ATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑A > 2:2618511/1‑91 ATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑A > 2:2618436/1‑91 ATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑A > 2:1975190/1‑91 ATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑A > 1:1166732/1‑91 ATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑A < 1:1150339/91‑1 ATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑A > 1:1166847/1‑91 GATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AGTTCGCAGTTTACAATTCGT < 1:1665219/91‑1 AATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAGTAACATACAAAATAAAGCGACCAATTTTGCAGTTTACAATTCGTAAC < 1:1373449/91‑1 AATGAGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTTTACAATTCGTAAC < 1:3894170/91‑1 GGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTTTACAATTCGTAACACT < 1:1369583/91‑1 GGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGC < 1:2205920/91‑1 GGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTTTACAATTCGTAACACTGC < 1:3276722/91‑1 GGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTTTACAATTCGTAACACTGC < 1:445964/91‑1 GGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCA < 1:414530/91‑1 tTGTAGAGAACATTTCTTTGTAATTTTATAATCGAAGAACATACAAAATAAAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAA < 2:3912872/90‑1 ATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAA < 1:3191546/91‑1 ATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAA < 1:3191245/91‑1 ATGTAGAGAACATTTCTTTGTAATTGTATAATCGAATAACATACAAAATAAAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAA < 2:151964/91‑1 TGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAAT < 1:766594/91‑1 TGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAAT < 2:3621773/91‑1 TGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAAT < 2:101197/91‑1 GAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGT < 1:1349088/91‑1 GAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGT < 2:3089886/91‑1 ACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCT < 1:3633579/91‑1 AAAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAAT > 1:3840617/1‑91 AAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATG > 2:3829454/1‑91 AAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATG > 1:1822217/1‑91 AAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATG < 2:2384337/91‑1 AAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTCATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATG < 2:1552131/91‑1 GCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTT > 1:2540269/1‑91 GCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTT > 2:1054640/1‑91 aGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTC < 2:3933092/90‑1 CGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTC > 2:327398/1‑91 CGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTC < 1:2628329/91‑1 CGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTC > 1:3521684/1‑91 CGACC‑AGTNCGCNGNTTACAATTCGTAACACTNCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTC < 1:410706/91‑1 GACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCT > 1:2152905/1‑91 GACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCT < 1:2962764/91‑1 CC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCT < 2:2274986/91‑1 C‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTA < 2:2415795/91‑1 C‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTA > 1:635404/1‑91 AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTAC > 1:2249419/1‑91 AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTAC > 1:2249672/1‑91 AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTAC > 1:3641917/1‑91 AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTAC > 1:2249720/1‑91 AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTAC > 1:2249760/1‑91 GCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/329112‑329211‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgacc‑aGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTAC < USA300TCH1516_ALE/329244‑329155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |