| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 330724 = | 227 (1.110) | 18 (0.100) | 14/148 | NT | 8.5% | intergenic (+15/‑69) | esxA/esaA | ESAT‑6 secretion system extracellular protein A/ESAT‑6 secretion accessory factor EsaA |
| ? | USA300TCH1516_ALE | 330754 = | 178 (0.950) | intergenic (+45/‑39) | esxA/esaA | ESAT‑6 secretion system extracellular protein A/ESAT‑6 secretion accessory factor EsaA | |||||
TGCATAAATCCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGCCACATTAGAAAATGTGACTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/330819‑330724‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttgcTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTATTATA > USA300TCH1516_ALE/330754‑330843 TGCATAAATCCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGCCACATTAGAAAATGTGAC > 1:673085/1‑91TGCATAAATCCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGCCACATTAGAAAATGTGAC < 1:340356/91‑1 GCATAAATCCAATTTTTCTTTTTTATGCCTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAACAAAGCAACATTAGATAATGTGACT > 2:1040466/1‑91 GCATAAATCCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGCCACATTAGAAAATGTGACT < 1:648134/91‑1 GCATAAATCCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGCCACATTAGAAAATGTGACT > 1:1575069/1‑91 CATAAATCCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGCCACATTAGAAAATGTGACTT < 1:3340456/91‑1 TAAATCCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGCCACATTAGAAAATGTGACTTTG < 1:2623153/91‑1 TAAATCCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGCCACATTAGAAAATGTGACTTTG < 2:2036799/91‑1 TAAATCCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGCCACATTAGAAAATGTGACTTTG < 1:3456257/91‑1 TAAATCCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGCCACATTAGAAAATGTGACTTTG < 1:2650626/91‑1 TAAATCCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGCCACATTAGAAAATGTGACTTTG < 2:3463764/91‑1 TAAATCCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGCCACATTAGAAAATGTGACTTTG > 2:1475227/1‑91 AAATCCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGCCACATTAGAAAATGTGACTTTGC > 2:18576/1‑91 AAATCCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGCCACATTAGAAAATGTGACTTTGC > 1:1465781/1‑91 CCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGTCACATTTTCTAATGTGGCTTTGCTTAT < 2:2290413/91‑1 CCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGTCACATTTTCTAATGTGGCTTTGCTTAT < 2:2290535/91‑1 CAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATC < 1:1457787/91‑1 ATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCAT < 1:1498039/91‑1 CATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGCCACATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAA > 1:2157293/1‑91 ATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAA < 1:1601066/91‑1 TTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAA < 1:2317617/91‑1 AGCAAAGCCACATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATT > 1:1670827/1‑91 AGCCACATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGC > 2:1226021/1‑91 GCCACATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCA > 1:946414/1‑91 CCACATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCAT > 1:64730/1‑91 CCACATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCAT > 1:928867/1‑91 CCACATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCAT > 1:928898/1‑91 CACATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGCAATAAGCATGAAAAAGAAAAATTGGATTTATGCATT > 2:3114491/1‑91 CACATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATT > 1:2284436/1‑91 ACATTAGAAAATGTTACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTA > 2:3353430/1‑91 ACATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTA > 2:3353660/1‑91 CATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGCAAGGAAATAAGCATGAACAAGAAAAATTGGATTTATGCATTAA > 2:767259/1‑91 CATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAA > 1:1414692/1‑91 CATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAA > 2:1456706/1‑91 TAGAAAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTG > 1:110763/1‑91 TGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTT > 1:2611804/1‑91 tgtaCTTAGCGTTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTGATTAT < 2:1616282/87‑1 TTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTAT < 1:3911070/91‑1 TTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTAT > 1:2693795/1‑91 TTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTAT < 2:2611214/91‑1 TTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTAT < 2:1049841/91‑1 TTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTAT < 1:2018056/91‑1 TTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTAT < 1:1399255/91‑1 TTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTAT > 2:535780/1‑91 TTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTATT > 1:1014038/1‑91 TGCTTATCATTTTTTTAAGAAAACAACTGAACGGAAATAAGAATGAAAAAGAAAAATTGGATTTATGCGTTAATTGTCACTTTAATTATTA > 2:3010789/1‑91 TGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTATTA > 2:2970210/1‑91 TGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTATTA > 2:2970486/1‑91 TGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTATTA > 1:466629/1‑91 TGCTTATCA‑TTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTATTAT < 1:2537848/91‑1 CTTATCATTTTTTTTATTTAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTATTATA > 2:839676/1‑91 CTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTATTATA > 1:3292322/1‑91 CTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTATTATA > 2:839669/1‑91 CTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTATTATA > 2:839677/1‑91 CTTATCAAATTTTTAAGAAAACAACTGAAAGTAAAGAAGAAAAAAAAAAAAAAATTGGATTTATGCATTAATTGTCACTTTAATTATTATA < 2:811315/91‑1 TGCATAAATCCAATTTTTCTTTTTCATGCTTATTTCCTTTCAGTTGTTTTCTTAAAAAAATGATAAGCAAAGCCACATTAGAAAATGTGACTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/330819‑330724‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttgcTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTATTATA > USA300TCH1516_ALE/330754‑330843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |