BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	330724 =	227 (1.110)	18 (0.100)	14/148	NT	8.5%	intergenic (+15/‑69)	esxA/esaA	ESAT‑6 secretion system extracellular protein A/ESAT‑6 secretion accessory factor EsaA
*	?	USA300TCH1516_ALE	330754 =	178 (0.950)	18 (0.100)	14/148	NT	8.5%	intergenic (+45/‑39)	esxA/esaA	ESAT‑6 secretion system extracellular protein A/ESAT‑6 secretion accessory factor EsaA

Only 100 of 273 total aligned reads displayed.

TCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTATTATAA  >  USA300TCH1516_ALE/330664‑330844

ccAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAAATGGCAAAGTCACATTTTCTAATGTGGCTTTGCt                                                                                            >  2:3218627/2‑91 (MQ=255)

aatccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataaGCAAAGTCACATTTTCTAATGTGGCTTTGCt                                                                                            >  1:1670827‑M1/61‑91 (MQ=255)

  aaGTACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTa                                                                                          <  1:3112625/91‑1 (MQ=255)

  aaGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTa                                                                                          >  2:1374403/1‑91 (MQ=255)

  aaGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTa                                                                                          <  2:3868816/91‑1 (MQ=255)

  aaGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTa                                                                                          >  1:2062656/1‑91 (MQ=255)

  aaGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTa                                                                                          <  2:328930/91‑1 (MQ=255)

  aaGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTa                                                                                          >  1:1625680/1‑91 (MQ=255)

  aaGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTa                                                                                          >  2:1375791/1‑91 (MQ=255)

   ccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataagcaaagtcacattttctaatgtggctttgcTTAt                                                                                         <  2:2290413‑M2/4‑1 (MQ=255)

   ccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataagcaaagtcacattttctaatgtggctttgcTTAt                                                                                         <  2:2290535‑M2/4‑1 (MQ=255)

   aGAACAAGACCAACGACTTTCTAATGATTTCGGTTTGCAAGAAGCATTCTGAAATTGGCAAAGTCACAGTTTCTAATGTGGGTTTGCTTAt                                                                                         <  2:725425/91‑1 (MQ=255)

    gAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATc                                                                                        <  2:816116/91‑1 (MQ=255)

    gAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATc                                                                                        >  2:1647100/1‑91 (MQ=255)

    gAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATc                                                                                        >  2:877439/1‑91 (MQ=255)

     aaCAAGACCTACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCa                                                                                       <  1:3794235/91‑1 (MQ=255)

     aaCAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCa                                                                                       >  1:1462315/1‑91 (MQ=255)

     aaCAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCa                                                                                       <  1:1773706/91‑1 (MQ=255)

      aCAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCAt                                                                                      <  1:1396604/91‑1 (MQ=255)

       cAAGACCATCAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCAtt                                                                                     <  2:3124157/91‑1 (MQ=255)

        aaGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTCTCTAATGTGGCTTTGCTTATCAttt                                                                                    >  2:276772/1‑91 (MQ=255)

           aCCATCAACTTTATAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTACTTATCAtttttt                                                                                 >  2:791113/1‑91 (MQ=255)

           aCCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCAtttttt                                                                                 >  1:2963395/1‑91 (MQ=255)

           aCCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCAtttttt                                                                                 <  1:2477847/91‑1 (MQ=255)

           aCCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCAtttttt                                                                                 >  2:2342817/1‑91 (MQ=255)

             caacaaCTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTa                                                                               <  2:1067172/91‑1 (MQ=255)

             caacaaCTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTa                                                                               >  1:1479977/1‑91 (MQ=255)

               acaacTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAg                                                                             >  2:437386/1‑91 (MQ=255)

               acaacTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAg                                                                             <  1:1506764/91‑1 (MQ=255)

                   cTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGaaaa                                                                         <  2:2534243/91‑1 (MQ=255)

                    tttCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCACAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAaac                                                                        >  2:3044051/1‑91 (MQ=255)

                     ttCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAaaca                                                                       <  1:2567011/91‑1 (MQ=255)

                     ttCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAaaca                                                                       >  1:855080/1‑91 (MQ=255)

                     ttCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAaaca                                                                       <  1:3246603/91‑1 (MQ=255)

                      tCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAaacaa                                                                      >  2:2886663/1‑91 (MQ=255)

                       cTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAaacaac                                                                     <  2:2191555/91‑1 (MQ=255)

                       cTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAaacaac                                                                     >  2:1815599/1‑91 (MQ=255)

                          ataatTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGa                                                                  <  2:2062301/91‑1 (MQ=255)

                           ttcctttcagttgttttcttaaaaaaatgataagcaaagtcacattttctaatgtggctttgcTTATCATTTTTTTAAGAAAACAACTGaa                                                                 <  1:2317617‑M2/28‑1 (MQ=255)

                            aatTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGaaa                                                                >  1:3634114/1‑91 (MQ=255)

                               ttCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGa                                                             <  1:1250194/91‑1 (MQ=255)

                                 cGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAATAATACCACTGACAGGaaa                                                           >  2:1711/1‑91 (MQ=255)

                                  ggTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAAt                                                          >  2:1566392/1‑91 (MQ=255)

                                   gTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATa                                                         <  2:3056386/91‑1 (MQ=255)

                                   gTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATa                                                         >  1:1802524/1‑91 (MQ=255)

                                   gTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATa                                                         >  2:2514960/1‑91 (MQ=255)

                                    tttGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATaa                                                        >  2:583318/1‑91 (MQ=255)

                                     ttGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAg                                                       <  2:3332033/91‑1 (MQ=255)

                                     ttGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAg                                                       <  2:3589667/91‑1 (MQ=255)

                                     ttGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAg                                                       <  2:190692/91‑1 (MQ=255)

                                      tGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGc                                                      <  1:167771/91‑1 (MQ=255)

                                        cAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCAt                                                    >  1:1291721/1‑91 (MQ=255)

                                            aaGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATgaaa                                                <  1:2862390/91‑1 (MQ=255)

                                            aaGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATgaaa                                                >  1:781838/1‑91 (MQ=255)

                                              gCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATgaaaaa                                              <  1:2011126/91‑1 (MQ=255)

                                                aTTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATgaaaaaga                                            <  1:652904/91‑1 (MQ=255)

                                                 ttCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATgaaaaagaa                                           >  1:1161915/1‑91 (MQ=255)

                                                 ttCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATgaaaaagaa                                           >  2:2263959/1‑91 (MQ=255)

                                                 ttCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATgaaaaagaa                                           >  2:117188/1‑91 (MQ=255)

                                                  tCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATgaaaaagaaa                                          >  1:3778586/1‑91 (MQ=255)

                                                    tGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATgaaaaagaaaaa                                        >  1:2939982/1‑91 (MQ=255)

                                                     atgataaGCAAAGCCACATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAAt                                       <  1:1498039‑M1/84‑1 (MQ=255)

                                                       gataaGCAAAGCCACATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTg                                     <  1:1457787‑M1/86‑1 (MQ=255)

                                                       aaTTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTg                                     <  2:2707091/91‑1 (MQ=255)

                                                       aaTTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTg                                     >  2:345516/1‑91 (MQ=255)

                                                        aTTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTgg                                    >  1:738356/1‑91 (MQ=255)

                                                         ttGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGa                                   >  1:3055640/1‑91 (MQ=255)

                                                             CAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTa                               <  1:3456257‑M1/91‑1 (MQ=255)

                                                                agccacattagaaaatgtgactttgcTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGc                            >  2:1226021‑M2/27‑91 (MQ=255)

                                                                AGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGc                            >  1:1575069‑M1/1‑91 (MQ=255)

                                                                AGTCACATTATCTAATGTTGCTTTGTTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAGGCATAAAAAAGAAAAATTGGATTTATGc                            >  2:1040466‑M1/1‑91 (MQ=255)

                                                                 GTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCa                           <  1:340356‑M1/91‑1 (MQ=255)

                                                                  tCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCAt                          <  1:2640709/91‑1 (MQ=255)

                                                                  ccacattagaaaatgtgactttgcTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCAt                          >  1:928867‑M2/25‑91 (MQ=255)

                                                                   cacattagaaaatgtgactttgcTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCAtt                         >  1:2284436‑M2/24‑91 (MQ=255)

                                                                     cattagaaaatgtgactttgcTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTaa                       >  1:1414692‑M2/22‑91 (MQ=255)

                                                                     caTTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGACAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTaa                       >  2:838286/1‑91 (MQ=255)

                                                                     caTTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTaa                       >  1:1022166/1‑91 (MQ=255)

                                                                      aTTTTCTAATGTGGCTTTGCTTATCATATTTTTAATAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAAt                      <  1:2165822/91‑1 (MQ=255)

                                                                       ttttCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAAtt                     >  2:2418081/1‑91 (MQ=255)

                                                                        agccTAATGTGGCTTTGCGTATCATTTTTGGAAGAAATCAACTGTTAGGATATAAGAAAAAAAAAAAAAAATTGGATTTATGCATTAATTg                    <  2:3703068/88‑1 (MQ=255)

                                                                          gcTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTc                  <  2:37521/90‑1 (MQ=255)

                                                                           cTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCa                 <  1:6221/91‑1 (MQ=255)

                                                                           cTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCa                 >  1:562195/1‑91 (MQ=255)

                                                                            tAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCAc                >  1:2197458/1‑91 (MQ=255)

                                                                             aaTGTGGCTTTGCTTATCATTTTTTTAAGAAATCAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACt               >  2:3709545/1‑91 (MQ=255)

                                                                             aaTGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACt               >  1:1939066/1‑91 (MQ=255)

                                                                              aTGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACtt              >  1:3214930/1‑91 (MQ=255)

                                                                               tgtgGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACttt             >  2:701017/1‑91 (MQ=255)

                                                                               tgtgGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACttt             <  2:686141/91‑1 (MQ=255)

                                                                                     tttgcTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAattat       >  2:535780‑M2/6‑91 (MQ=255)

                                                                                     tttgcTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAattat       <  2:2611214‑M2/86‑1 (MQ=255)

                                                                                     tttgcTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAattat       >  1:2693795‑M2/6‑91 (MQ=255)

                                                                                     tttgcTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAattat       <  1:3911070‑M2/86‑1 (MQ=255)

                                                                                     tgtacTTAGCGTTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTGattat       <  2:1616282‑M2/86‑1 (MQ=255)

                                                                                      ttgcTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAattatt      >  1:1014038‑M2/5‑91 (MQ=255)

                                                                                       tgcTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAAttatta     >  2:2970210‑M2/4‑91 (MQ=255)

                                                                                       tgcTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAAttatta     >  1:466629‑M2/4‑91 (MQ=255)

                                                                                         cTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTATtata   >  1:3292322‑M2/2‑91 (MQ=255)

                                                                                         cTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTATtata   >  2:839677‑M2/2‑91 (MQ=255)

TCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTTATGCATTAATTGTCACTTTAATTATTATAA  >  USA300TCH1516_ALE/330664‑330844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.