| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 330724 = | 227 (1.110) | 18 (0.100) | 14/148 | NT | 8.5% | intergenic (+15/‑69) | esxA/esaA | ESAT‑6 secretion system extracellular protein A/ESAT‑6 secretion accessory factor EsaA |
| ? | USA300TCH1516_ALE | 330754 = | 178 (0.950) | intergenic (+45/‑39) | esxA/esaA | ESAT‑6 secretion system extracellular protein A/ESAT‑6 secretion accessory factor EsaA | |||||
Only 100 of 286 total aligned reads displayed.
ACAACAATTGAATAGCACTGCTGATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTT > USA300TCH1516_ALE/330634‑330814 | tataataattaaagtgacaattaatgcataaatccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataag > 2:839669‑M1/91‑91 (MQ=255)tataataattaaagtgacaattaatgcataaatccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataag > 1:3292322‑M1/91‑91 (MQ=255) taataattaaagtgacaattaatgcataaatccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataaGCa > 1:466629‑M1/89‑91 (MQ=255) taataattaaagtgacaattaacgcataaatccaatttttctttttcattcttatttccgttcagttgttttcttaaaaaaatgataaGCa > 2:3010789‑M1/89‑91 (MQ=255) aataattaaagtgacaattaatgcataaatccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataaGCaa > 1:1014038‑M1/88‑91 (MQ=255) ataattaaagtgacaattaatgcataaatccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataaGCaaa < 2:1049841‑M1/5‑1 (MQ=255) ataattaaagtgacaattaatgcataaatccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataaGCaaa < 1:2018056‑M1/5‑1 (MQ=255) ataattaaagtgacaattaatgcataaatccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataaGCaaa < 1:3911070‑M1/5‑1 (MQ=255) ataattaaagtgacaattaatgcataaatccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataaGCaaa > 2:535780‑M1/87‑91 (MQ=255) aTTGAATAGCACTGCTGATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGt < 2:2759442/91‑1 (MQ=255) aTTGAATAGCACTGCTGATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGt > 1:3415204/1‑91 (MQ=255) ttGAATAGCACTGCTGATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTc < 1:3813505/91‑1 (MQ=255) ttGAATAGCACTGCTGATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTc < 2:366522/91‑1 (MQ=255) tGAATAGCACTGCTGATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTca > 1:3135765/1‑91 (MQ=255) gAATAGCACTGCTGATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTcac > 2:2587520/1‑91 (MQ=255) aaTAGCACTGCTGATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTcaca < 2:1880328/91‑1 (MQ=255) aaTAGCACTGCTGATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTcaca < 1:1548730/91‑1 (MQ=255) aaTAGCACTGCTGATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTcaca < 1:2122690/91‑1 (MQ=255) aTAGCACTGCTGATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACAt > 2:2015340/1‑91 (MQ=255) tAGCACTGCTGATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACAtt < 1:1031730/91‑1 (MQ=255) gCACTGCTGATGTCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACAtttt < 1:2626628/91‑1 (MQ=255) aCTGCTGATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCt > 2:2612095/1‑91 (MQ=255) aCTGCTGATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCt > 2:3065024/1‑91 (MQ=255) aCTGCTGATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATAATGAAATTGGTAAAGTCACATTTTCt > 2:3418585/1‑91 (MQ=255) ctcctgATGCCGTTCAAGACCAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTCTCTa > 2:225852/4‑91 (MQ=255) tgctgATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTaa < 2:1417252/91‑1 (MQ=255) tgctgATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTaa < 2:2535795/91‑1 (MQ=255) gctgATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAAt < 1:1206623/91‑1 (MQ=255) ttaatgcataaatccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataaGCAAAGTCACATTTTCTAAtg > 1:1414692‑M1/71‑91 (MQ=255) ctgATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAAtg < 1:3940062/91‑1 (MQ=255) tgATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAAtgt < 1:1115689/91‑1 (MQ=255) taatgcataaatccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataaGCAAAGTAACATTTTCTAAtgt > 2:3353430‑M1/70‑91 (MQ=255) aatgcataaatccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataaGCAAAGTCACATTTTCTAAtgtg > 1:2284436‑M1/69‑91 (MQ=255) atgcataaatccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataaGCAAAGTCACATTTTCTAATGTgg > 1:928867‑M1/68‑91 (MQ=255) atgcataaatccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataaGCAAAGTCACATTTTCTAATGTgg > 1:64730‑M1/68‑91 (MQ=255) tGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGc < 1:2892593/91‑1 (MQ=255) gcataaatccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataaGCAAAGTCACATTTTCTAATGTGGCt > 2:1226021‑M1/66‑91 (MQ=255) gCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTACTGTGGCt > 1:1953773/1‑91 (MQ=255) ccGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCtt > 1:2739176/1‑91 (MQ=255) ttCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGc > 2:3118073/1‑91 (MQ=255) tCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCt > 1:815919/1‑91 (MQ=255) aatccaatttttctttttcatgcttatttcctttcagttgttttcttaaaaaaatgataaGCAAAGTCACATTTTCTAATGTGGCTTTGCt > 1:1670827‑M1/61‑91 (MQ=255) aaGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTa < 2:328930/91‑1 (MQ=255) aaGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTa < 2:3868816/91‑1 (MQ=255) aaGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTa > 2:1374618/1‑91 (MQ=255) aGAACAAGACCAACGACTTTCTAATGATTTCGGTTTGCAAGAAGCATTCTGAAATTGGCAAAGTCACAGTTTCTAATGTGGGTTTGCTTAt < 2:725425/91‑1 (MQ=255) gAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATc < 2:816099/91‑1 (MQ=255) gAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATc > 2:877123/1‑91 (MQ=255) gAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATc > 2:878061/1‑91 (MQ=255) aCAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCAt < 1:1396604/91‑1 (MQ=255) cAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCAtt > 2:2411603/1‑91 (MQ=255) aaGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCAttt > 1:1895443/1‑91 (MQ=255) aCCATCAACTTTATAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTACTTATCAtttttt > 2:791113/1‑91 (MQ=255) aCCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCAtttttt < 1:2477847/91‑1 (MQ=255) aCCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCAtttttt > 1:2963144/1‑91 (MQ=255) caacaaCTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTa > 1:1479977/1‑91 (MQ=255) aacaacTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTaa > 1:2822865/1‑91 (MQ=255) aacaacTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTaa > 1:3636190/1‑91 (MQ=255) acaacTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAg < 1:1506750/91‑1 (MQ=255) aacTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGaa < 2:162640/91‑1 (MQ=255) aacATTCTAGTAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGaa < 1:3557166/91‑1 (MQ=255) cTTTCGAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGaaaa < 2:3201422/91‑1 (MQ=255) ttCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAaaca < 1:2567011/91‑1 (MQ=255) tCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAaacaa > 1:309755/1‑91 (MQ=255) cTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAaacaac > 2:1815599/1‑91 (MQ=255) cTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAaacaac < 2:2191555/91‑1 (MQ=255) cTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAaacaac < 2:221844/91‑1 (MQ=255) taataaTTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAaacaaca > 2:3281905/1‑90 (MQ=255) taataaTTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACt > 2:2287828/1‑91 (MQ=255) taataaTTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACt < 1:2388018/91‑1 (MQ=255) taataaTTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACt < 2:2071559/91‑1 (MQ=255) taataaTTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACt > 2:1594147/1‑91 (MQ=255) aataatTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACAGTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTg < 2:2947804/91‑1 (MQ=255) aatTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGaaa < 1:1790777/91‑1 (MQ=255) aatTTCAGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGaaa > 1:123874/1‑91 (MQ=255) atTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGaacg > 2:2774636/1‑89 (MQ=255) ttcagttgttttcttaaaaaaatgataaGCAAAGCCACATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGaa < 1:2317617‑M1/63‑1 (MQ=255) cGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAATAATACCACTGACAGGaaa > 2:1711/1‑91 (MQ=255) gTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATa > 1:1802524/1‑91 (MQ=255) gTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATa < 2:3056386/91‑1 (MQ=255) gTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATa > 2:2514960/1‑91 (MQ=255) gTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATa > 1:881/1‑91 (MQ=255) gTTTGCAACAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATa < 1:1726990/91‑1 (MQ=255) tttGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATaa > 2:583318/1‑91 (MQ=255) ttGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAg < 2:190692/91‑1 (MQ=255) ttGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAg < 2:3589667/91‑1 (MQ=255) cAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCAt > 1:1291721/1‑91 (MQ=255) aTAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATga < 1:2978910/91‑1 (MQ=255) aaGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATgaaa < 1:2862390/91‑1 (MQ=255) ttCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATgaaaaagaa > 2:117188/1‑91 (MQ=255) ttCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATgaaaaagaa > 2:2298716/1‑91 (MQ=255) tCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATgaaaaagaaa > 1:767846/1‑91 (MQ=255) tCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATgaaaaagaaa > 1:3778586/1‑91 (MQ=255) tGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATgaaaaagaaaaa > 2:654351/1‑91 (MQ=255) gataaGCAAAGCCACATTAGAAAATGTGACTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTg < 1:1457787‑M1/86‑1 (MQ=255) aaTTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATAAAAAAGAAAAATTg < 2:2707068/91‑1 (MQ=255) ttGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGa < 1:3257708/91‑1 (MQ=255) tGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGAt > 1:2203243/1‑91 (MQ=255) tGGCAAAGTCACATTGTCTAAGGGGGCGGTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGAt < 2:498914/91‑1 (MQ=255) ggCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAACAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGAtt > 2:3539033/1‑91 (MQ=255) | ACAACAATTGAATAGCACTGCTGATGCCGTTCAAGAACAAGACCAACAACTTTCTAATAATTTCGGTTTGCAATAAGCATTCTGAAATTGGCAAAGTCACATTTTCTAATGTGGCTTTGCTTATCATTTTTTTAAGAAAACAACTGAAAGGAAATAAGCATGAAAAAGAAAAATTGGATTT > USA300TCH1516_ALE/330634‑330814 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |