| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 337678 = | 183 (0.900) | 11 (0.060) | 5/146 | NT | 6.2% | coding (1816/4440 nt) | essC | ESAT‑6 secretion machinery protein EssC |
| ? | USA300TCH1516_ALE | 337710 = | 167 (0.900) | coding (1848/4440 nt) | essC | ESAT‑6 secretion machinery protein EssC | |||||
TTTCGTTTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGCATTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/337774‑337678‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catttttAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTACCTTT > USA300TCH1516_ALE/337710‑337799 TTTCGTTTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGC > 1:1378698/1‑91TTTCGTTTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGC > 2:3389055/1‑91TTTCGTTTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGC < 2:2886800/91‑1TTTCGTTTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGC > 2:2701336/1‑91TTTCGTTTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGC < 2:2060221/91‑1TTTCGTTTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGC < 2:1709945/91‑1TTTCGTTTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGC < 1:3491685/91‑1 TTCGTTTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGCA < 2:633219/91‑1 TTCGTTTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGCA > 2:1015346/1‑91 TCGTTTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGCAT < 2:19999/91‑1 GTTTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGCATTT > 1:854691/1‑91 TTTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGCATTTT < 1:828885/91‑1 TTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGCATTTTT < 2:587244/91‑1 TTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGCATTTTT > 1:1390877/1‑91 TTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGCATTTTT > 2:3132098/1‑91 TTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGCATTTTT < 2:2068026/91‑1 TTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGCATTTTT < 1:3298395/91‑1 TTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGCATTTTT < 1:853133/91‑1 AAATGTAATACTATCAGGAATTGCATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAAC > 1:3067281/1‑91 AAATGTAATACTATCAGGAATTGCATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAAC > 1:3067386/1‑91 AATGTAATACTATCAGGAATTGCATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACG > 1:3122382/1‑91 AATGTAATACTATCAGGAATTGCATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACG > 1:1718143/1‑91 AATGTAATACTATCAGGAATTGCATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACG > 1:1718322/1‑91 ATGTAATACTATCAGGAATTGCATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGA > 2:3767178/1‑91 ATGTAATACTATCAGGAATTGCATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGA > 1:1929315/1‑91 TGTAATACTATCAGGAATTGCATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAA > 1:2451406/1‑91 TAATACTATCAGGAATTGCATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAAC > 1:3211639/1‑91 TAATACTATCAGGAATTGCATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAAC > 2:2274526/1‑91 TAATACTATCAGGAATTGCATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGATTAATCGATGGAGACAAAACGAAAC > 2:3420370/1‑91 CATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGT < 1:1363361/91‑1 CATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGT < 1:3874857/91‑1 ATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTA < 2:203194/91‑1 ATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTA < 1:2914385/91‑1 TTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTACCT > 2:2091930/1‑91 TTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTACCT > 1:2882175/1‑91 TTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTACCT < 2:1934544/91‑1 TTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTACCT > 1:2882158/1‑91 TTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTACCTT < 2:1408830/91‑1 TAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTACCTTT > 2:3394560/1‑91 TAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTACCTTT > 1:952338/1‑91 TAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTCAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTACCTTT > 2:3056305/1‑91 TTTCGTTTTGTCTCCATCGATTAACCACATCAAGCTGATCTACTTCTTTCACGTTATACATCTCTAAAAATGTAATACTATCAGGAATTGCATTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/337774‑337678‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catttttAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTACCTTT > USA300TCH1516_ALE/337710‑337799 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |