BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	337678 =	183 (0.900)	11 (0.060)	5/146	NT	6.2%	coding (1816/4440 nt)	essC	ESAT‑6 secretion machinery protein EssC
*	?	USA300TCH1516_ALE	337710 =	167 (0.900)	11 (0.060)	5/146	NT	6.2%	coding (1848/4440 nt)	essC	ESAT‑6 secretion machinery protein EssC

Only 100 of 233 total aligned reads displayed.

CGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTACCTTTA  >  USA300TCH1516_ALE/337620‑337800

   cGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTagag                                                                                         <  2:2454536/91‑1 (MQ=255)

    gATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAgaga                                                                                        >  2:3139338/1‑91 (MQ=255)

      tAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATg                                                                                      >  1:3317327/1‑91 (MQ=255)

      tAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATg                                                                                      <  2:3061335/91‑1 (MQ=255)

         aGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGtat                                                                                   <  2:771848/91‑1 (MQ=255)

          gcatatatCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGtata                                                                                  >  2:1172739/3‑91 (MQ=255)

          gAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGtata                                                                                  >  2:2141753/1‑91 (MQ=255)

            atatatCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAAc                                                                                <  1:3274360/91‑1 (MQ=255)

            atatatCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAAc                                                                                <  1:239191/91‑1 (MQ=255)

             tatatCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACg                                                                               <  1:3098173/91‑1 (MQ=255)

             tatatCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACg                                                                               <  2:535596/91‑1 (MQ=255)

             tatatCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACg                                                                               <  1:303376/91‑1 (MQ=255)

               tatCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTg                                                                             >  2:519965/1‑91 (MQ=255)

               tatCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTg                                                                             <  1:663825/91‑1 (MQ=255)

                 tCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGaa                                                                           <  1:3890109/91‑1 (MQ=255)

                 gcgcgcgACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGaa                                                                           <  2:3923711/90‑1 (MQ=255)

                  cgcgcgACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGaaa                                                                          >  1:3001300/1‑91 (MQ=255)

                   gcgcgACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAaag                                                                         >  2:2943575/1‑91 (MQ=255)

                   gcgcgACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAaag                                                                         >  2:2385431/1‑91 (MQ=255)

                   gcgcgACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAaag                                                                         <  1:1429641/91‑1 (MQ=255)

                    cgcgACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAaaga                                                                        <  1:1626660/91‑1 (MQ=255)

                     gcgACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAaagaa                                                                       >  2:1081589/1‑91 (MQ=255)

                         cGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAg                                                                   >  1:2520730/1‑91 (MQ=255)

                         cGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAg                                                                   >  1:2013761/1‑91 (MQ=255)

                         cGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAg                                                                   >  2:195207/1‑91 (MQ=255)

                          gTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGa                                                                  >  1:899389/1‑91 (MQ=255)

                            atGGCGAATTTGATACACGTCGAACATGTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATc                                                                <  2:3713568/90‑1 (MQ=255)

                             tGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCa                                                               >  1:2783586/1‑91 (MQ=255)

                             tGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCa                                                               <  1:980086/91‑1 (MQ=255)

                              ggCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAg                                                              <  2:664737/91‑1 (MQ=255)

                              ggCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAg                                                              <  2:1341025/91‑1 (MQ=255)

                              ggCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAg                                                              >  2:2327614/1‑91 (MQ=255)

                               gCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGc                                                             <  2:3092894/91‑1 (MQ=255)

                               gCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGc                                                             <  2:145878/91‑1 (MQ=255)

                                cGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCt                                                            <  2:1820846/91‑1 (MQ=255)

                                cGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCt                                                            <  1:482285/91‑1 (MQ=255)

                                  aaTTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTg                                                          <  1:1846840/91‑1 (MQ=255)

                                   aTTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGa                                                         <  2:3430865/91‑1 (MQ=255)

                                    tttGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGAt                                                        >  1:3237911/1‑91 (MQ=255)

                                    tttGATACACGTCGAACATTTGAAAAATGCAAGTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGAt                                                        <  2:3400409/91‑1 (MQ=255)

                                       gATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGAtgtg                                                     <  1:2275324/91‑1 (MQ=255)

                                        aTACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTgg                                                    <  2:1354239/91‑1 (MQ=255)

                                        aTACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTgg                                                    >  2:3333296/1‑91 (MQ=255)

                                        aTACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTgg                                                    >  1:1250149/1‑91 (MQ=255)

                                         tACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGt                                                   >  1:2838563/1‑91 (MQ=255)

                                          acacGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGtt                                                  <  1:2143189/91‑1 (MQ=255)

                                          acacGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGtt                                                  >  1:454664/1‑91 (MQ=255)

                                          acacGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGtt                                                  >  2:1300124/1‑91 (MQ=255)

                                           cacGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTa                                                 <  1:3564833/91‑1 (MQ=255)

                                            acGTCGATAATTTGAAAAATGCAATTCCAGATAGTATTACAAGTGTAGAGATGTATAACGTGAAAGCAGTAGCTCAGCTTGATGTGGTTaa                                                <  2:3505852/91‑1 (MQ=255)

                                            acGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTaa                                                <  1:3720532/91‑1 (MQ=255)

                                             cGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAAt                                               >  1:102658/1‑91 (MQ=255)

                                               tCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGTAAGAAGTAGATCAGCTTGATGTGGTTAATCg                                             <  1:3512903/91‑1 (MQ=255)

                                                 gAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAAGCGAt                                           <  1:3123473/91‑1 (MQ=255)

                                                     aTTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGgag                                       <  1:3434835/91‑1 (MQ=255)

                                                     aTTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGgag                                       >  1:1358909/1‑91 (MQ=255)

                                                        tGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACa                                    >  1:2541230/1‑91 (MQ=255)

                                                        tGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACa                                    >  2:1917129/1‑91 (MQ=255)

                                                          AAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACaaa                                  >  1:1390877‑M1/1‑91 (MQ=255)

                                                           AAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACaaaa                                 <  1:828885‑M1/91‑1 (MQ=255)

                                                            aaatgtaatactatcaggaattgcatttttAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAAc                                >  1:3067386‑M2/31‑91 (MQ=255)

                                                            AAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAAc                                >  1:854691‑M1/1‑91 (MQ=255)

                                                             aatgtaatactatcaggaattgcatttttAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACg                               >  1:1718143‑M2/30‑91 (MQ=255)

                                                              ATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGa                              <  2:19999‑M1/91‑1 (MQ=255)

                                                               TGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGaa                             >  2:1015346‑M1/1‑91 (MQ=255)

                                                                GCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGaaa                            <  2:1709945‑M1/91‑1 (MQ=255)

                                                                GCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGaaa                            >  2:3389055‑M1/1‑91 (MQ=255)

                                                                GCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGaaa                            >  2:2701336‑M1/1‑91 (MQ=255)

                                                                 taatactatcaggaattgcatttttAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAAc                           >  2:2274526‑M2/26‑91 (MQ=255)

                                                                 cAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAAc                           >  2:3280433/1‑91 (MQ=255)

                                                                 cAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAAc                           <  2:1827825/91‑1 (MQ=255)

                                                                  aaTTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACa                          >  1:3873171/1‑91 (MQ=255)

                                                                  aaTTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACa                          >  1:2343454/1‑91 (MQ=255)

                                                                   aTTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACAt                         <  2:1614644/91‑1 (MQ=255)

                                                                   aTTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACAt                         >  1:3453344/1‑91 (MQ=255)

                                                                   aTTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACAt                         >  1:2469877/1‑91 (MQ=255)

                                                                   aTTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACAt                         >  2:3075620/1‑91 (MQ=255)

                                                                   aTTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACAt                         <  1:1950833/91‑1 (MQ=255)

                                                                     tCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATAc                       >  2:3396933/1‑91 (MQ=255)

                                                                     tCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATAc                       >  2:1422794/1‑91 (MQ=255)

                                                                     tCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATAc                       >  2:3235459/1‑91 (MQ=255)

                                                                        tGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACaaa                    <  1:1937287/91‑1 (MQ=255)

                                                                         gATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACCTACaaaa                   >  2:1156156/1‑91 (MQ=255)

                                                                         gATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACaaaa                   >  1:1482084/1‑91 (MQ=255)

                                                                         gATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACaaaa                   >  2:3309385/1‑91 (MQ=255)

                                                                           tAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACg                 >  2:890997/1‑91 (MQ=255)

                                                                           tAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACg                 <  1:3922523/91‑1 (MQ=255)

                                                                            aGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATATGGTTAATCGATGTAGACAAAACGAAACATACAGAACGa                >  1:3674785/1‑91 (MQ=255)

                                                                             gTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGAt               >  1:1887643/1‑91 (MQ=255)

                                                                             gTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGAt               <  1:1081950/91‑1 (MQ=255)

                                                                                ttACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGc            >  2:2102602/1‑91 (MQ=255)

                                                                                 tACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCa           >  1:1205917/1‑91 (MQ=255)

                                                                                 tACATGTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCa           <  2:3654256/91‑1 (MQ=255)

                                                                                  aCATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAg          <  1:2493778/91‑1 (MQ=255)

                                                                                  aCATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAg          <  1:2489833/91‑1 (MQ=255)

                                                                                   catttttAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGt         <  1:1363361‑M2/84‑1 (MQ=255)

                                                                                    atttttAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTa        <  2:203194‑M2/85‑1 (MQ=255)

                                                                                    atttttAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTa        <  1:2914385‑M2/85‑1 (MQ=255)

                                                                                       tttAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTACCt     >  2:2091930‑M2/4‑91 (MQ=255)

                                                                                          agagATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTACCTTTa  >  1:1796608/1‑91 (MQ=255)

CGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAAACGAAACATACAAAACGATGGCAGTACCTTTA  >  USA300TCH1516_ALE/337620‑337800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.