BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	337678 =	183 (0.900)	11 (0.060)	5/146	NT	6.2%	coding (1816/4440 nt)	essC	ESAT‑6 secretion machinery protein EssC
*	?	USA300TCH1516_ALE	337710 =	167 (0.900)	11 (0.060)	5/146	NT	6.2%	coding (1848/4440 nt)	essC	ESAT‑6 secretion machinery protein EssC

Only 100 of 229 total aligned reads displayed.

CAATTGAAATTTACACCTGAAAATATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAA  >  USA300TCH1516_ALE/337588‑337768

 aaggtactgccatcgttttgtatgtttcgttttgtctccatcgattaaccacatcaagctgatctacttctttcacgttatacatctctaa                                                                                           <  2:1408830‑M1/2‑1 (MQ=255)

   ttGAAATTTACACCTGAAAATATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGaaaa                                                                                         >  1:821740/1‑91 (MQ=255)

   ttGAAATTTACACCTGAAAATATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGaaaa                                                                                         >  2:3082421/1‑91 (MQ=255)

    tGAAATTTACACCTGAAAATATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGaaaaa                                                                                        <  1:3482988/91‑1 (MQ=255)

     tactgccatcgttttgtatgtttcgttttgtctccatcgattaaccacatcaagctgatctacttctttcacgttatacatctctAAAAAt                                                                                       <  1:2914385‑M1/6‑1 (MQ=255)

      actgccatcgttttgtatgtttcgttttgtctccatcgattaaccacatcaagctgatctacttctttcacgttatacatctctAAAAATg                                                                                      <  1:1363361‑M1/7‑1 (MQ=255)

       aaTTTACACCTGAAAATATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGc                                                                                     >  2:1501389/1‑91 (MQ=255)

       aaTTTACACCTGAAAATATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGc                                                                                     >  1:3226529/1‑91 (MQ=255)

         tttACACCTGAAAATATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCaa                                                                                   <  1:3639053/91‑1 (MQ=255)

           tACACCTGAAAATATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAAtt                                                                                 <  1:1443064/91‑1 (MQ=255)

            acacCTGAAAATATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTc                                                                                <  2:3378591/91‑1 (MQ=255)

             cacCTGAAAATATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTcc                                                                               <  1:3435804/91‑1 (MQ=255)

              acCTGAAAATATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCt                                                                              >  1:3525500/1‑91 (MQ=255)

              acCTGAAAATATTGATAACGTCGATAAAGAAGATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCt                                                                              <  2:270292/91‑1 (MQ=255)

               ccTGAAAATATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTg                                                                             <  1:2411057/91‑1 (MQ=255)

               ccTGAAAATATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTg                                                                             >  1:2501350/1‑91 (MQ=255)

               ccTGAAAATATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTg                                                                             <  2:3861509/91‑1 (MQ=255)

                   aaaaTATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAg                                                                         <  2:2769751/91‑1 (MQ=255)

                   aaaaTATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGAAAAAAAAAAAAAAAATGCAACTCCTGATAg                                                                         <  2:1982523/91‑1 (MQ=255)

                     aaTATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTa                                                                       <  2:3730628/91‑1 (MQ=255)

                       tatTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTAtt                                                                     <  2:723554/91‑1 (MQ=255)

                       tatTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTAtt                                                                     <  1:680664/91‑1 (MQ=255)

                        atTGATAACGTCGATAAAGAATATATCGCGCGAGGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTa                                                                    <  1:3239999/91‑1 (MQ=255)

                         ttGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTAc                                                                   >  2:884141/1‑91 (MQ=255)

                         ttGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTAc                                                                   >  1:3873236/1‑91 (MQ=255)

                         ttGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTAc                                                                   >  1:1096748/1‑91 (MQ=255)

                         ttGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTAc                                                                   >  2:3619545/1‑91 (MQ=255)

                         ttGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCAGATAGTATTAc                                                                   >  1:3581667/1‑91 (MQ=255)

                           tcgttttgtctccatcgattaaccacatcaagctgatctacttctttcacgttatacatctctAAAAATGCAATTCCTGATAGTATTACAt                                                                 >  2:3767178‑M1/64‑91 (MQ=255)

                           gATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACAt                                                                 >  1:2049052/1‑91 (MQ=255)

                           gATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACAt                                                                 >  1:2604291/1‑91 (MQ=255)

                            cgttttgtctccatcgattaaccacatcaagctgatctacttctttcacgttatacatctctAAAAATGCAATTCCTGATAGTATTACAtt                                                                >  1:3122382‑M1/63‑91 (MQ=255)

                            cgttttgtctccatcgattaaccacatcaagctgatctacttctttcacgttatacatctctAAAAATGCAATTCCTGATAGTATTACAtt                                                                >  1:1718143‑M1/63‑91 (MQ=255)

                             gttttgtctccatcgattaaccacatcaagctgatctacttctttcacgttatacatctctAAAAATGCAATTCCTGATAGTATTACAttt                                                               >  1:3067386‑M1/62‑91 (MQ=255)

                              aaCGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACAtttt                                                              <  1:566332/91‑1 (MQ=255)

                                 gTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTag                                                           >  1:2323556/1‑91 (MQ=255)

                                   cGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTagag                                                         >  2:2004157/1‑91 (MQ=255)

                                    gATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAgaga                                                        >  2:792235/1‑91 (MQ=255)

                                    gATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAgaga                                                        >  2:3139436/1‑91 (MQ=255)

                                    gATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAgaga                                                        <  1:1665266/91‑1 (MQ=255)

                                      tAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATg                                                      <  2:3061335/91‑1 (MQ=255)

                                       aaaGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGt                                                     >  1:428910/1‑91 (MQ=255)

                                        aaGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTAAGAGATGta                                                    >  1:3785681/1‑91 (MQ=255)

                                         aGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGtat                                                   >  1:912162/1‑91 (MQ=255)

                                          gcatatatCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGtata                                                  >  2:1172739/3‑91 (MQ=255)

                                            atatatCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAAc                                                <  2:1457282/91‑1 (MQ=255)

                                            atatatCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAAc                                                <  2:3685589/91‑1 (MQ=255)

                                            atatatCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAAc                                                <  1:3274360/91‑1 (MQ=255)

                                             tatatCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACg                                               <  1:303376/91‑1 (MQ=255)

                                             tatatCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACg                                               <  2:535596/91‑1 (MQ=255)

                                              atatCGCGCGACGTTTGACGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGt                                              <  2:2443/91‑1 (MQ=255)

                                               tatCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTg                                             >  2:519965/1‑91 (MQ=255)

                                                 tCGCGCGACGTTTGGCGAATTTGATACATGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGaa                                           <  2:1119754/91‑1 (MQ=255)

                                                 tCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGaa                                           <  1:3890109/91‑1 (MQ=255)

                                                 gcgcgcgACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGaa                                           <  2:3923711/90‑1 (MQ=255)

                                                  cgcgcgACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGaaa                                          >  1:3001300/1‑91 (MQ=255)

                                                   gcgcgACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAaag                                         >  2:2943575/1‑91 (MQ=255)

                                                   gcgcgACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAaag                                         >  2:2385431/1‑91 (MQ=255)

                                                    cgcgACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAaaga                                        <  1:1626660/91‑1 (MQ=255)

                                                         cGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAg                                   >  2:195207/1‑91 (MQ=255)

                                                         cGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAg                                   >  1:2013761/1‑91 (MQ=255)

                                                          gTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGa                                  >  1:896883/1‑91 (MQ=255)

                                                             tGGCGAATTTGATACACGTCGAACATTTGGATAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCa                               <  1:3166630/91‑1 (MQ=255)

                                                             tGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCa                               >  1:2380171/1‑91 (MQ=255)

                                                             tGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCa                               >  1:2783586/1‑91 (MQ=255)

                                                              ggCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAg                              <  2:1341055/91‑1 (MQ=255)

                                                              ggCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAg                              >  2:2327614/1‑91 (MQ=255)

                                                               gCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGc                             <  1:1424224/91‑1 (MQ=255)

                                                               gCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGc                             <  2:3092894/91‑1 (MQ=255)

                                                                cGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCt                            >  1:1480563/1‑91 (MQ=255)

                                                                cGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCt                            <  2:1820846/91‑1 (MQ=255)

                                                                cGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCt                            <  2:1687022/91‑1 (MQ=255)

                                                                   aTTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGa                         <  2:3430865/91‑1 (MQ=255)

                                                                   aTTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGa                         >  2:3265146/1‑91 (MQ=255)

                                                                    tttGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGAt                        <  2:2117687/91‑1 (MQ=255)

                                                                    tttGATACACGTCGAACATTTGAAAAATGCAAGTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGAt                        <  2:3400409/91‑1 (MQ=255)

                                                                      tGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGAtgt                      >  1:2247368/1‑91 (MQ=255)

                                                                       gATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGAtgtg                     <  1:2929081/91‑1 (MQ=255)

                                                                        aTACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTgg                    <  1:2529016/91‑1 (MQ=255)

                                                                        aTACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTgg                    >  2:2249019/1‑91 (MQ=255)

                                                                        aTACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTgg                    >  2:3333296/1‑91 (MQ=255)

                                                                         tACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGt                   >  1:2838563/1‑91 (MQ=255)

                                                                         tACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGt                   <  2:3295430/91‑1 (MQ=255)

                                                                          acacGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGtt                  >  1:455187/1‑91 (MQ=255)

                                                                          acacGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGtt                  >  2:1300930/1‑91 (MQ=255)

                                                                           cacGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTa                 <  1:3564665/91‑1 (MQ=255)

                                                                            acGTCGATAATTTGAAAAATGCAATTCCAGATAGTATTACAAGTGTAGAGATGTATAACGTGAAAGCAGTAGCTCAGCTTGATGTGGTTaa                <  2:3505852/91‑1 (MQ=255)

                                                                             cGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAAt               <  1:1947040/91‑1 (MQ=255)

                                                                             cGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAAt               <  2:2463155/91‑1 (MQ=255)

                                                                             cGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAAt               >  1:102658/1‑91 (MQ=255)

                                                                                cGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGa            <  1:1844004/91‑1 (MQ=255)

                                                                                 gAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGAt           >  1:3397728/1‑91 (MQ=255)

                                                                                     aTTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGgag       >  1:2708840/1‑91 (MQ=255)

                                                                                     aTTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGgag       >  1:1358909/1‑91 (MQ=255)

                                                                                        tGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACa    <  1:2472419/91‑1 (MQ=255)

                                                                                        tGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACa    >  1:999606/1‑91 (MQ=255)

                                                                                        tGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACa    >  2:1917129/1‑91 (MQ=255)

                                                                                          AAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACaaa  >  2:3132098‑M1/1‑91 (MQ=255)

                                                                                          AAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACaaa  <  2:587244‑M1/91‑1 (MQ=255)

                                                                                          AAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACaaa  <  2:2068026‑M1/91‑1 (MQ=255)

CAATTGAAATTTACACCTGAAAATATTGATAACGTCGATAAAGAATATATCGCGCGACGTTTGGCGAATTTGATACACGTCGAACATTTGAAAAATGCAATTCCTGATAGTATTACATTTTTAGAGATGTATAACGTGAAAGAAGTAGATCAGCTTGATGTGGTTAATCGATGGAGACAAA  >  USA300TCH1516_ALE/337588‑337768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.