| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 349720 = | 256 (1.260) | 15 (0.080) | 9/142 | NT | 7.0% | intergenic (+272/‑314) | USA300HOU_RS01580/yezG_6 | hypothetical protein/putative antitoxin YezG |
| ? | USA300TCH1516_ALE | 349754 = | 172 (0.950) | intergenic (+306/‑280) | USA300HOU_RS01580/yezG_6 | hypothetical protein/putative antitoxin YezG | |||||
ATAATAGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/349818‑349720‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttttgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAG > USA300TCH1516_ALE/349754‑349843 ATAATAGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATAC < 1:1357642/91‑1ATAATAGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATAC > 1:3658067/1‑91ATAATAGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATAC < 1:3604446/91‑1 ATAGCCCTAAATCTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTT < 2:2505316/91‑1 ATAGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTT > 2:794665/1‑91 ATAGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTT > 2:2288815/1‑91 ATAGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTT > 2:2288921/1‑91 ATAGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTT < 2:2504112/91‑1 ATAGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTT > 2:3241456/1‑91 ATAGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTT > 1:3928827/1‑91 ATAGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTT > 1:1737570/1‑91 ATAGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTT < 1:1296692/91‑1 AGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTT > 1:771609/1‑91 AGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTT > 2:2968386/1‑91 AGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTT > 2:2049607/1‑91 AGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTT > 2:3768759/1‑91 AGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTT < 2:2848297/91‑1 AGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTT > 2:2429336/1‑91 GCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTT > 2:3281359/1‑91 GCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTT > 2:3281548/1‑91 GCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTT < 2:596590/91‑1 GCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTT > 1:3653042/1‑91 GCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTT < 2:1553932/91‑1 GCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTT < 1:332566/91‑1 GCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTT < 1:1815279/91‑1 GCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTT > 2:3837037/1‑91 GCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTT < 2:596494/91‑1 CCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTTG > 1:821060/1‑91 CCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTTG > 2:1052663/1‑91 CCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTTG < 2:1354382/91‑1 CCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTTG > 1:818792/1‑91 CCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTTG > 1:819043/1‑91 CCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTTG < 2:1354728/91‑1 CCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTTG < 1:3719351/91‑1 CCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTTG < 2:1074474/91‑1 CCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTTG < 2:481878/91‑1 CCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATCCTTTTTTGC > 1:3780937/1‑91 CCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTTGC > 2:1955152/1‑91 TTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGT > 1:1009317/1‑91 TATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAG > 1:2269252/1‑91 ATAATTATAGTAAAAAAGATATTAATAGTATATACTTTTTTACTATAATTATAAATAGTTAAATAAATTGAAAGACAAAATAATGAGTAGG > 1:1047531/1‑91 ATTATAGTAAAAAAGATATTAATAGTATATACTTTTTTACTATAATTATAAATAGTTAAATAAATTGAAAGACAAAATAATGAGTAGGAGT > 2:2505709/1‑91 ATTATAGCAAAAAAGATATTAATAGTATATACTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGT > 1:68945/1‑91 ATTATAGCAAAAAAGATATTAATAGTATATACTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGT > 2:2610613/1‑91 ATTATACCAAAAAAGATATTAATAGTATATACTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGCAGT > 1:3069717/1‑91 GCAAAAAAGATATTAATAGTATATACTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGG > 1:1829541/1‑91 AAAAGATATTAATAGTATATACTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTA > 2:3277098/1‑91 AGATATTAATAGTATATACTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTA > 2:329045/1‑91 GATATTAATAGTATATACTTTTTTTCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTAT > 2:1199313/1‑91 GATATTAATAGTATATACTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACCAAATAATGAGTAGGAGTTTTAGGGCTATTAT > 2:1199497/1‑91 ATATTAATAGTATATACTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATT > 1:498087/1‑91 TATTAATAGTATATACTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTT > 2:1338274/1‑91 TATTAATAGTATATACTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTT > 1:3828481/1‑91 CTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATA > 1:1207725/1‑91 CTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATA > 2:2707778/1‑91 CTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATA > 1:1324880/1‑91 CTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATA > 1:3429490/1‑91 TTTTTTGTTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATAC > 2:3649398/1‑91 TTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATAC < 2:25143/91‑1 TTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATAC < 1:2336722/91‑1 TTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATTATACT > 2:3652429/1‑91 TTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACg > 1:245377/1‑90 TTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACT < 1:1008604/91‑1 TTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACT < 1:3208071/91‑1 TTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACT > 1:3429849/1‑91 TTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACT < 1:1008459/91‑1 TTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACT > 2:1133207/1‑91 TTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATGATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTG < 1:3150447/91‑1 TTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTG < 1:2820265/91‑1 TTTGCTTTAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTtg > 2:3924081/1‑89 TTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGC > 1:1906080/1‑91 TTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGC < 1:2105943/91‑1 tttCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATCGTTTACAAATAATATAATACTGCA > 2:3682020/4‑91 TTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCA > 1:1843953/1‑91 TTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCA < 1:446693/91‑1 TTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCA > 1:3795688/1‑91 TTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCA < 2:866625/91‑1 TTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCA < 2:2214961/91‑1 TTGCGATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCA < 1:1512072/91‑1 TGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAA > 2:1231448/1‑91 tCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAA > 2:934608/2‑91 GCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAA > 1:3823008/1‑91 GCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAA > 1:684342/1‑91 GCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAA > 2:657811/1‑91 GCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAA > 2:1225762/1‑91 GCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAA > 2:1225836/1‑91 GCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAAGACTGCAAA > 2:3437280/1‑91 CTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAG > 1:42896/1‑91 CTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAG < 1:991412/91‑1 CTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAG < 1:991581/91‑1 CTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAG < 1:992516/91‑1 CTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAG > 2:875657/1‑91 CTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAG > 2:882371/1‑91 CTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAG > 2:882379/1‑91 CTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAG > 2:882393/1‑91 CTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAG > 2:91602/1‑91 CTATAATTATAAATAGGTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAG < 2:1903897/91‑1 ATAATAGCCCTAAAACTCCTACTCATTATTTTGTCTTTCTATTTATTTAACTATTTATAATTATAGCAAAAAAGATATTAATAGTATATACTTTTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/349818‑349720‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttttgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAG > USA300TCH1516_ALE/349754‑349843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |