BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	349720 =	256 (1.260)	15 (0.080)	9/142	NT	7.0%	intergenic (+272/‑314)	USA300HOU_RS01580/yezG_6	hypothetical protein/putative antitoxin YezG
*	?	USA300TCH1516_ALE	349754 =	172 (0.950)	15 (0.080)	9/142	NT	7.0%	intergenic (+306/‑280)	USA300HOU_RS01580/yezG_6	hypothetical protein/putative antitoxin YezG

Only 100 of 312 total aligned reads displayed.

CAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGA  >  USA300TCH1516_ALE/349664‑349844

cAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCt                                                                                            <  1:3397463/91‑1 (MQ=255)

  aGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATAGAAAAAAAGTATATACTATTAATATCTTTTTTGCtat                                                                                          <  2:1153291/91‑1 (MQ=255)

   gATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTACTATCTTTTTTGCtata                                                                                         >  2:3039592/1‑91 (MQ=255)

   gATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGAAAAAAAAGTATATACTATTAATATCTTTTTTGCtata                                                                                         <  2:1090674/91‑1 (MQ=255)

    attattATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATaa                                                                                        <  1:1000441/91‑1 (MQ=255)

    attattATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATaa                                                                                        <  2:112706/91‑1 (MQ=255)

     ttattaTAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAAt                                                                                       <  1:2675175/91‑1 (MQ=255)

     ttattaTAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAAt                                                                                       >  1:3714395/1‑91 (MQ=255)

     ttattaTAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAAt                                                                                       <  2:3071936/91‑1 (MQ=255)

     ttattaTAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAAt                                                                                       <  2:3821219/91‑1 (MQ=255)

     actgctactcattattttgtctttctatttatttaactatttataattataGCAAAAAAGTATATACTATTAATATCTTTTTTGGTATAAt                                                                                       >  1:3069717‑M1/52‑91 (MQ=255)

     actcctactcattattttgtctttctatttatttaactatttataattataGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAAt                                                                                       >  1:68945‑M1/52‑91 (MQ=255)

      tattatAAATGTATTACATATAGGTGCTGGTAAATTTTATTAAAAAAAAGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAAtt                                                                                      <  2:265573/91‑1 (MQ=18)

       attatAATTGTATTACATGTAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATta                                                                                     <  2:1261113/91‑1 (MQ=255)

           taATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATaaa                                                                                 <  2:1519428/91‑1 (MQ=255)

           taATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATaaa                                                                                 <  1:1351398/91‑1 (MQ=255)

           actcattattttgtctttctatttatttaactatttataattataGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATaaa                                                                                 >  1:1009317‑M1/46‑91 (MQ=255)

            aaTTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAAt                                                                                >  1:1392837/1‑91 (MQ=255)

            aaTTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATATTTTTTGCTATAATTATAAAt                                                                                >  1:435977/1‑91 (MQ=255)

                 tATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTta                                                                           >  2:1816582/1‑91 (MQ=255)

                   ttACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaaa                                                                         <  1:1136496/91‑1 (MQ=255)

                   ttACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaaa                                                                         <  1:1231864/91‑1 (MQ=255)

                    tACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaaat                                                                        >  2:2601023/1‑91 (MQ=255)

                        tataGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTaaataaat                                                                    >  1:3627116/1‑91 (MQ=255)

                          taGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAg                                                                  <  1:3498713/91‑1 (MQ=255)

                            ggTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGaa                                                                >  2:3083477/1‑91 (MQ=255)

                              tGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAg                                                              <  1:402526/91‑1 (MQ=255)

                               gCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGa                                                             <  1:1626759/91‑1 (MQ=255)

                                 tGGTAAATTTTATTTACGAAATGGCAAAAAAGTAAATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACa                                                           <  2:2805733/91‑1 (MQ=255)

                                  ggTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACaa                                                          >  1:3442254/1‑91 (MQ=255)

                                     aatttttATTTACGAAATGATAAAAAAGTATATACTATTAATATCTTTTTTGATATAATTATAAATATTTAAATAAATAGAAAGACAAaat                                                       <  2:3429283/88‑1 (MQ=1)

                                     aaaTTTTATTTACGAAAAAAAAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaat                                                       <  2:787338/91‑1 (MQ=14)

                                      aaTTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaata                                                      >  2:1658032/1‑91 (MQ=255)

                                      aaTTTTATTTACGAAATGGCAAAAAAGAATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaata                                                      >  2:2192020/1‑91 (MQ=255)

                                       aTTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaataa                                                     >  1:900676/1‑91 (MQ=255)

                                       aTTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaataa                                                     <  1:2436224/91‑1 (MQ=255)

                                        ttttATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaataat                                                    <  1:2792365/91‑1 (MQ=255)

                                         tttatttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATg                                                   >  2:678664/1‑91 (MQ=255)

                                          ttatttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGa                                                  >  2:2133817/1‑91 (MQ=255)

                                           tatttaCGGAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAg                                                 <  2:3578600/91‑1 (MQ=255)

                                           tatttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAg                                                 <  2:1163116/91‑1 (MQ=255)

                                            atttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGt                                                <  1:2190316/91‑1 (MQ=255)

                                             tttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTa                                               <  2:3315768/91‑1 (MQ=255)

                                              ttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAg                                              <  1:693536/91‑1 (MQ=255)

                                              tataattatagcaaaaaagatattaatagtatatacttttttgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAg                                              >  1:2269252‑M2/45‑91 (MQ=255)

                                               taCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAgg                                             >  2:1777543/1‑91 (MQ=255)

                                               taCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAgg                                             <  1:2972813/91‑1 (MQ=255)

                                               taCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAgg                                             >  2:1201345/1‑91 (MQ=255)

                                               ataattatagtaaaaaagatattaatagtatatacttttttacTATAATTATAAATAGTTAAATAAATTGAAAGACAAAATAATGAGTAgg                                             >  1:1047531‑M2/44‑91 (MQ=255)

                                                 cGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAg                                           >  1:3654710/1‑91 (MQ=255)

                                                 cGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAg                                           >  2:1032492/1‑91 (MQ=255)

                                                 cGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAg                                           >  2:323495/1‑91 (MQ=255)

                                                  attatagtaaaaaagatattaatagtatatacttttttacTATAATTATAAATAGTTAAATAAATTGAAAGACAAAATAATGAGTAGGAGt                                          >  2:2505709‑M2/41‑91 (MQ=255)

                                                      tGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTa                                      >  1:2220433/1‑91 (MQ=255)

                                                       ggCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAg                                     <  1:2570773/91‑1 (MQ=255)

                                                        GCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAgg                                    >  2:1955152‑M1/1‑91 (MQ=255)

                                                        GCAAAAAAGGATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAgg                                    >  1:3780937‑M1/1‑91 (MQ=255)

                                                         aaataaaGTATATAATATTAAAATCTTAATTGCTAAAATTATAAATAGGTAAATAAGTAGAAAGACAAAATAGTGAGTAGGAGTTTTAggg                                   <  2:587601/87‑1 (MQ=255)

                                                         CAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAggg                                   <  2:1354382‑M1/91‑1 (MQ=255)

                                                         CAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAggg                                   >  1:819043‑M1/1‑91 (MQ=255)

                                                         CAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAggg                                   <  2:481878‑M1/91‑1 (MQ=255)

                                                          AAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGc                                  >  2:3281359‑M1/1‑91 (MQ=255)

                                                          AAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGc                                  <  1:1815279‑M1/91‑1 (MQ=255)

                                                          AAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGc                                  <  2:596590‑M1/91‑1 (MQ=255)

                                                           AAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCt                                 >  2:3768759‑M1/1‑91 (MQ=255)

                                                           AAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCt                                 >  2:2429336‑M1/1‑91 (MQ=255)

                                                             AAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtat                               >  2:794665‑M1/1‑91 (MQ=255)

                                                             AAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtat                               >  1:3928827‑M1/1‑91 (MQ=255)

                                                             AAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtat                               <  1:1296692‑M1/91‑1 (MQ=255)

                                                             AAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtat                               <  2:2504112‑M1/91‑1 (MQ=255)

                                                             AAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtat                               >  1:1737570‑M1/1‑91 (MQ=255)

                                                                 tatataCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTattatt                           <  2:227920/91‑1 (MQ=255)

                                                                 atattaatagtatatacttttttgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTattatt                           >  1:498087‑M2/26‑91 (MQ=255)

                                                                  tattaatagtatatacttttttgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTAttt                          >  1:3828481‑M2/25‑91 (MQ=255)

                                                                   tataCTATTAATATCTTTTTTTTTTTTTTTCTAAAAAGTTAAATAAATAGAAAGACAAAATCATGTGTAGTAGTTTTAGGCCTATGATTTa                         >  2:3641128/1‑91 (MQ=9)

                                                                   tataCTATTAATATCTTTTTTGCTATAATTATATATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTa                         <  2:2291486/91‑1 (MQ=255)

                                                                   tataCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTa                         >  2:651522/1‑91 (MQ=255)

                                                                    ataCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGGCAAAATAATGAGTAGGAGTTTTAGGGCTATTAtttgt                        <  1:3331062/91‑3 (MQ=255)

                                                                    ataCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTAtttgt                        <  1:585679/91‑3 (MQ=255)

                                                                     taCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACa                       <  1:2289742/91‑1 (MQ=255)

                                                                     taCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACa                       <  1:191315/91‑1 (MQ=255)

                                                                     taCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACa                       >  1:1989691/1‑91 (MQ=255)

                                                                      tcTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACaa                      >  2:369653/2‑91 (MQ=255)

                                                                          ttAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAaataa                  >  2:133747/1‑91 (MQ=255)

                                                                             atatCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataatat               <  2:2325816/91‑1 (MQ=255)

                                                                               atCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataatataa             >  1:2059495/1‑91 (MQ=255)

                                                                               atCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataatataa             >  2:2494395/1‑91 (MQ=255)

                                                                               atCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGACTATTATTTACAAataatataa             >  2:3194198/1‑91 (MQ=255)

                                                                                 cttttttgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAAtaatataata           >  2:2707778‑M2/10‑91 (MQ=255)

                                                                                  ttttttgtTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATAc          >  2:3649398‑M2/9‑91 (MQ=255)

                                                                                   tttttgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACt         <  1:3208071‑M2/84‑1 (MQ=255)

                                                                                     tttgcTTTAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATacttg       >  2:3924081‑M2/6‑89 (MQ=255)

                                                                                     tttgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGc       <  1:2105943‑M2/86‑1 (MQ=255)

                                                                                      ttgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCa      >  1:1843953‑M2/5‑91 (MQ=255)

                                                                                      ttgcGATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCa      <  1:1512072‑M2/87‑1 (MQ=255)

                                                                                       ttttataATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCaa     >  2:295684/4‑91 (MQ=255)

                                                                                        gCTATAATTATAAATAGTTAAACAAATAGCAAGCCATAATCATCAGAACGAGATTCAGGCGTATTATTTACAAATAATATACTACTGCaaa    >  2:1227481/1‑91 (MQ=19)

                                                                                         cTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAg   <  1:991581‑M2/90‑1 (MQ=255)

                                                                                         cTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAg   >  2:882371‑M2/2‑91 (MQ=255)

                                                                                         cTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAg   >  2:91602‑M2/2‑91 (MQ=255)

CAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGA  >  USA300TCH1516_ALE/349664‑349844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.