| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 368778 | 157 (0.770) | 11 (0.060) | 7/150 | NT | 6.8% | intergenic (+212/+66) | bglK/ybbH_2 | Beta‑glucoside kinase/putative HTH‑type transcriptional regulator YbbH |
| ? | USA300TCH1516_ALE | = 368819 | 156 (0.820) | intergenic (+253/+25) | bglK/ybbH_2 | Beta‑glucoside kinase/putative HTH‑type transcriptional regulator YbbH | |||||
ACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/368683‑368778‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacctGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCAAATATTTTTTTACATTTTCTAAAA < USA300TCH1516_ALE/368819‑368730 ACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGGGATATTAAAATTTTAGAAAATGT‑AAAAAATATTTGGTATTGAAATTAAAAAAGC < 2:2096593/91‑1 CAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGC > 2:1453238/1‑91 CAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGC < 1:611027/91‑1 CAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGC < 1:306800/91‑1 AGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCA < 2:3816389/91‑1 AGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCA > 2:1401292/1‑91 AGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCA < 2:3489726/91‑1 AGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCA > 1:1851534/1‑91 GTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTACAAAAATATTTGGTAGTGAAATTAAAAAAGCAC > 1:3386382/1‑91 GTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCAC > 2:3795933/1‑91 TGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACC > 2:2478391/1‑91 GTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAACTTTTAGAAAATGTAAAAAAATATTTGATATTGAAATTAAAAAAGCACCT > 2:3000349/1‑91 GTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCT > 1:773437/1‑91 GTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCT > 1:773467/1‑91 TATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACG < 1:3093759/91‑1 TTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAG < 1:721944/91‑1 TTAAAATTTTAGAAAACGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAG < 2:3789255/91‑1 TAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGT < 1:873349/91‑1 TAAAATTTAAAAAAAAGAAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGT < 2:847236/91‑1 TAAAATTATAGAAAATGTCAAAAAATATTTGGTATTGAAATTAAACAAGCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGT < 2:846110/91‑1 TTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTA < 1:1518988/91‑1 TTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTA < 1:1358772/91‑1 TTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAG < 2:1411219/91‑1 AGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTG < 2:1318444/91‑1 GAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGC < 2:2470393/91‑1 CACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCAAATATTTTTTTACATTTTCT < 1:3923886/91‑1 CACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCAAATATTTTTTTACATTTTCT < 2:3648502/91‑1 CACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCAAATATTTTTTTACATTTTCT < 2:3898915/91‑1 CACCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCAAATATTTTTTTACATTTTCT < 2:3898994/91‑1 CCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCAAATATTTTTTTACATTTTCTAA < 2:1300510/91‑1 CCTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCAAATATTTTTTTACATTTTCTAA > 1:3753209/1‑91 CTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCAAATATTTTTTTACATTTTCTAAA < 2:1956441/91‑1 CTGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCAAATATTTTTTTACATTTTCTAAA < 2:1956472/91‑1 TGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCAAATATTTTTTTACATTTTCTAAAA > 1:2420377/1‑91 TGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCAAATATTTTTTTACATTTTCTAAAA > 1:2420287/1‑91 ACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/368683‑368778‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacctGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCAAATATTTTTTTACATTTTCTAAAA < USA300TCH1516_ALE/368819‑368730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |