BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 368778	157 (0.770)	11 (0.060)	7/150	NT	6.8%	intergenic (+212/+66)	bglK/ybbH_2	Beta‑glucoside kinase/putative HTH‑type transcriptional regulator YbbH
*	?	USA300TCH1516_ALE	= 368819	156 (0.820)	11 (0.060)	7/150	NT	6.8%	intergenic (+253/+25)	bglK/ybbH_2	Beta‑glucoside kinase/putative HTH‑type transcriptional regulator YbbH

Only 100 of 208 total aligned reads displayed.

TTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAA  >  USA300TCH1516_ALE/368730‑368909

ttttAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCa                                                                                           >  1:2420377‑M2/1‑90 (MQ=255)

 tttAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCag                                                                                          <  2:1956441‑M2/91‑3 (MQ=255)

  ttAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCagg                                                                                         <  2:1300510‑M2/91‑4 (MQ=255)

    aGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggtg                                                                                       <  2:3898994‑M2/91‑6 (MQ=255)

    aGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggtg                                                                                       <  1:3923886‑M2/91‑6 (MQ=255)

      aaaaTGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGa                                                                                     <  1:2556234/91‑1 (MQ=255)

        aaTGTTAAAAAATATTTGGTATTGAAATTAAAAAAGCACATAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAtt                                                                                   <  1:3683074/91‑1 (MQ=255)

        aaTGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAtt                                                                                   >  2:1194443/1‑91 (MQ=255)

         aTGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAttt                                                                                  >  1:3460002/1‑91 (MQ=255)

          tGTAAAAAAAGATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTg                                                                                 <  2:469900/91‑1 (MQ=255)

               aaaaaTATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAatat                                                                            >  2:598345/1‑91 (MQ=255)

                aaaaTATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGCCAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAatatc                                                                           >  2:1544361/1‑90 (MQ=255)

                 aaaTATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATAtac                                                                          >  2:2034272/1‑91 (MQ=255)

                 aaaTATTTGGTAATGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATAtac                                                                          >  1:3026429/1‑91 (MQ=255)

                  aaTATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATAtact                                                                         >  1:3484425/1‑91 (MQ=255)

                    tatTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATAtactac                                                                       <  1:2028161/91‑1 (MQ=255)

                    tatTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATAtactac                                                                       <  1:117656/91‑1 (MQ=255)

                     atTTGGTATTGGAATTAAAAAAGAACCTAGCAACACGTTGGGACAATCACGATGATTGTTTACAGTTGCAGGTGGATTTGAATATactact                                                                      <  2:3017414/91‑1 (MQ=255)

                      tttGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATActacta                                                                     <  2:1636082/91‑1 (MQ=255)

                       ttGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAg                                                                    <  2:1910654/91‑1 (MQ=255)

                        tGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGt                                                                   >  2:1790698/1‑91 (MQ=255)

                        tGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGt                                                                   <  1:1163708/91‑1 (MQ=255)

                        tGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGt                                                                   >  2:556533/1‑91 (MQ=255)

                        tGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGt                                                                   >  1:2398103/1‑91 (MQ=255)

                         ggTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGtt                                                                  <  1:3412670/91‑1 (MQ=255)

                         ggTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGtt                                                                  <  2:1274231/91‑1 (MQ=255)

                            aTTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTAtt                                                               <  1:1800672/91‑1 (MQ=255)

                             ttGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTAttt                                                              <  2:2198806/91‑1 (MQ=255)

                               gAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATttgt                                                            <  1:916664/91‑1 (MQ=255)

                                  aTTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTtgttgt                                                         >  1:3837735/1‑91 (MQ=255)

                                   ttAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTc                                                        >  1:3218076/1‑91 (MQ=255)

                                   ttAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTc                                                        >  2:2060429/1‑91 (MQ=255)

                                    tAAAAAAGCACCTAGCAACTCGTTGGGACAATCACTATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCt                                                       <  1:3284189/91‑1 (MQ=255)

                                    tAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCt                                                       >  1:3170659/1‑91 (MQ=255)

                                       aaaaGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAgg                                                    <  2:1378711/91‑1 (MQ=255)

                                        aaaGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGa                                                   <  1:3762582/91‑1 (MQ=255)

                                        aaaGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGa                                                   <  2:3653867/91‑1 (MQ=255)

                                         aaGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGat                                                  >  2:1001146/1‑91 (MQ=255)

                                         aaGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGat                                                  <  1:2855083/91‑1 (MQ=255)

                                          aGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGata                                                 <  2:65156/91‑1 (MQ=255)

                                          aGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGata                                                 <  2:351618/91‑1 (MQ=255)

                                          aGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGata                                                 <  2:827443/91‑1 (MQ=255)

                                             ACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGataata                                              >  1:2155994‑M1/1‑91 (MQ=255)

                                              CCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTATAAGTTATTTGATGTCTAGGATAATAg                                             <  2:3425533‑M1/91‑1 (MQ=255)

                                               CTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGa                                            <  1:1926808‑M1/91‑1 (MQ=255)

                                               CTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGa                                            <  1:1042502‑M1/91‑1 (MQ=255)

                                               CTAGCAACTCGTTGGAACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATAAACTACTAGTTATTTGTTGTCTAGGATAATAGa                                            <  1:3367065‑M1/91‑1 (MQ=255)

                                                tAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggtgcttttttaatttcaataccaaatatttttttacattttctaaaa                                           <  1:1518988‑M2/91‑50 (MQ=255)

                                                 aGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGAtt                                          >  1:2920733/1‑91 (MQ=255)

                                                 aGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGAtt                                          <  2:667350/91‑1 (MQ=255)

                                                 aGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGAtt                                          <  2:3794662/91‑1 (MQ=255)

                                                  gCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGAttt                                         >  2:1686104/1‑91 (MQ=255)

                                                    aaCTCGTTGGGACAATCACGGTGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAg                                       <  1:3614995/91‑1 (MQ=255)

                                                     aCTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggtgcttttttaatttcaataccaaatattttttttcttttttttaaatttta                                      <  2:847236‑M2/91‑55 (MQ=255)

                                                     aCTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggtgcttttttaatttcaataccaaatatttttttacattttctaaaatttta                                      <  1:873349‑M2/91‑55 (MQ=255)

                                                      cTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTa                                     <  1:65890/91‑1 (MQ=255)

                                                       tCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTTGTTATTTGTTGTCTAGGATAATAGATTTAGTAt                                    >  2:594493/1‑91 (MQ=255)

                                                       tCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTAt                                    <  2:232474/91‑1 (MQ=255)

                                                       tCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTAt                                    <  1:2567693/91‑1 (MQ=255)

                                                        cGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATg                                   <  2:3587517/91‑1 (MQ=255)

                                                        cGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATg                                   <  1:814368/91‑1 (MQ=255)

                                                        cGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTCAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATg                                   <  1:3135897/91‑1 (MQ=255)

                                                         gTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGt                                  >  1:161622/1‑91 (MQ=255)

                                                         gTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGt                                  <  1:184621/91‑1 (MQ=255)

                                                          ttGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGtt                                 >  1:2437627/1‑91 (MQ=255)

                                                           tGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTg                                >  1:1733316/1‑91 (MQ=255)

                                                             ggACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGAt                              >  1:65712/1‑91 (MQ=255)

                                                             ggACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGAt                              <  2:3409984/91‑1 (MQ=255)

                                                             ggACAATCACGATGACTGTCTACAGTTGCAGGGGGATATGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGAt                              >  2:3769003/1‑91 (MQ=255)

                                                              gACAATCACGCTGATTGTCTACAGTTGCAGGTGGATTTGTATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATa                             <  2:1459338/91‑1 (MQ=255)

                                                              gACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTCTTTGTTGTCTAGGATAATAGATTTAGTATGTTGATa                             >  2:2523721/1‑91 (MQ=255)

                                                               aCAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATaa                            <  1:972083/91‑1 (MQ=255)

                                                               aCAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTAGTTGTTGTCTAGGATAATAGATTTAGTATGTTGATaa                            >  2:3689612/1‑91 (MQ=255)

                                                                cAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAg                           >  1:3000022/1‑91 (MQ=255)

                                                                cAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAg                           >  2:2696769/1‑91 (MQ=255)

                                                                  aTCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGtt                         >  1:1207363/1‑91 (MQ=255)

                                                                    cACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTg                       <  2:3839312/91‑1 (MQ=255)

                                                                     atcgtgatTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGa                      >  1:3337157/5‑91 (MQ=255)

                                                                     atcgtgatTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGa                      >  1:588418/5‑91 (MQ=255)

                                                                     aCGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGa                      <  2:3052347/91‑1 (MQ=255)

                                                                      cGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGAc                     >  2:147505/1‑91 (MQ=255)

                                                                      cGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGAc                     >  1:847789/1‑91 (MQ=255)

                                                                       gatgatTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACt                    >  2:764849/1‑91 (MQ=255)

                                                                       gatgatTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACt                    <  1:250790/91‑1 (MQ=255)

                                                                       cgtgatTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACt                    >  2:3607318/3‑91 (MQ=255)

                                                                        atgatTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTc                   >  1:2901040/1‑91 (MQ=255)

                                                                        atgatTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTc                   <  1:3519822/91‑1 (MQ=255)

                                                                         tgatTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCa                  >  1:1306448/1‑91 (MQ=255)

                                                                          gatTGTCTAGGGTTGCAGGTGGATTTGAATATTCTACTAGTGATTGGTTGTCTGGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAg                 <  2:2116199/91‑1 (MQ=255)

                                                                          gatTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAg                 <  2:3345132/91‑1 (MQ=255)

                                                                          gatTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAg                 <  2:2115952/91‑1 (MQ=255)

                                                                          gatTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAg                 <  1:3166039/91‑1 (MQ=255)

                                                                            ttGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGAt               >  2:615139/1‑91 (MQ=255)

                                                                             tGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGAtt              <  1:1931011/91‑1 (MQ=255)

                                                                               tCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCg            <  1:1481453/91‑1 (MQ=255)

                                                                                cTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGt           <  1:791903/91‑1 (MQ=255)

                                                                                  aCAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTAt         >  2:2713851/1‑91 (MQ=255)

                                                                                  aCAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTAt         <  2:1159448/91‑1 (MQ=255)

                                                                                    aGTTGCAGGTGGGTTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTAttt       <  2:3933665/91‑1 (MQ=255)

                                                                                     gTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTAtttt      <  2:2439364/91‑1 (MQ=255)

TTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAA  >  USA300TCH1516_ALE/368730‑368909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.