| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 389251 = | 206 (1.010) | 10 (0.060) | 8/132 | NT | 6.5% | intergenic (+4/+79) | USA300HOU_RS01780/glpT | hypothetical protein/Glycerol‑3‑phosphate transporter |
| ? | USA300TCH1516_ALE | 389318 = | 120 (0.720) | intergenic (+71/+12) | USA300HOU_RS01780/glpT | hypothetical protein/Glycerol‑3‑phosphate transporter | |||||
AGGACAAGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/389354‑389251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccatatgactttATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTGCTG > USA300TCH1516_ALE/389318‑389406 AGGACAAGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCA < 1:2572852/91‑1 GGACAAGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAA > 1:3739231/1‑91 GGACAAGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAA > 1:1705732/1‑91 GACAAGAAACCGTTCATCATTAAATGATAAAAAATACAGTCATATGGTTATATTATCGAAAGATGATATATTCATCTCTTATAAGTTCAAC > 2:3839244/1‑91 GACAAGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAAC > 1:2369034/1‑91 GACAAGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAAC > 2:1505962/1‑91 ACAAGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACC < 2:2587726/91‑1 CAAGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCA < 1:116277/91‑1 AAGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCAT < 1:1084413/91‑1 AAGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCAT > 2:2127388/1‑91 AAGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCAT < 1:1084397/91‑1 AAGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCAT < 2:825240/91‑1 AGAAACCGTTCATCATTAAATGATAAAAAATAATGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATA < 1:3233389/91‑1 AGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTTATCTCTTATAAGTTAAACCATA > 2:299017/1‑91 AGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATA < 1:3270073/91‑1 AGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATA > 2:1189008/1‑91 AGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATA < 2:2484283/91‑1 AGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATA > 2:800556/1‑91 AGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATA < 1:1329121/91‑1 GAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATAT > 2:1526532/1‑91 gAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATG < 2:3937480/90‑1 AAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATG < 2:1108526/91‑1 AAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATG > 2:425718/1‑91 AAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATG < 2:1565126/91‑1 AAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATG < 2:1565306/91‑1 AAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATG < 2:3937189/91‑1 AAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATG > 2:2201271/1‑91 AAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATG < 2:3549118/91‑1 AAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATG > 2:2903311/1‑91 AAACCGTTCATCAAAAAAAAAAAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATG < 2:831394/91‑1 AAAACGTTCATAATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATG < 2:339673/91‑1 ACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGAC < 1:2471075/91‑1 ACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGAC > 2:1519804/1‑91 ACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGAC < 1:3631780/91‑1 ACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGAC > 1:951813/1‑91 ACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGAC < 1:2306927/91‑1 CCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACT > 2:1592670/1‑91 CCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACT > 2:137128/1‑91 CCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACT > 2:505995/1‑91 CCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACT > 2:137506/1‑91 CCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACT > 1:3852990/1‑91 CGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCTTATGACTT > 2:278644/1‑91 CGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACATTATGACTT > 2:278697/1‑91 GTTCATCATTAAATGATAAAAAATAACGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACTTT > 2:2237856/1‑91 GTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACTTT > 2:10228/1‑91 ATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACTTTATTTTTTATCATTTA > 1:1916540/1‑91 TAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACTTTATTTTTTATCATTTAA > 1:581745/1‑91 AAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACTTTATTTTTTATCATTTAAT > 1:262695/1‑91 ATAAAGTCATATGGTTATCTTATCGAAAGAAGATATAAACATCTCTTATAAGTTCAACCATATGACTTTATTATTTATCATTTAATGAAGA > 2:3395209/1‑91 AAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACTTTATTTTTTATCATTTAATGATGAAC > 1:1619846/1‑91 AAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACTTTATTTTTTATCATTTAATGATGAACG > 1:2237012/1‑91 AAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACTTTATTTTTTATCATTTAATGATGAACG > 2:3011838/1‑91 AAGTCATATGGTTATCTTATCGAAAGATGATATAGTCATCGCTTATAAGTTCCACCATATGACTCTATTTTTCATCACTTAATGATGAACG > 2:3157087/1‑91 ATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTC > 1:2399360/1‑91 TATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCT < 2:1636076/91‑1 ACCATATGCCTATATTTTTTATCATTTAATGATGAACGGTTCCTTGTCCTACTTTATTCCCAGTGAGGATAAAGCTCCACATTCAAAACcc > 2:1484709/1‑89 ACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACAGTGCAAACAC > 1:3776853/1‑91 CCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACA > 2:2692423/1‑91 CCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACA > 2:3639580/1‑91 CCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACA < 2:1747018/91‑1 CCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACA < 1:2991457/91‑1 CCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACA < 1:2991496/91‑1 CCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACA < 1:1190155/91‑1 CATATGACTTTATTTTTTATCATTTCATGATGAACGGTTGCTTGTCCTACTTTGTTCCAAGTGAGGATAAAGCTCAACATTGCAAACACAC < 1:3682089/91‑1 CATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTTTTCCAAGTGAGGATAAAGCTCAACATTGCAAACACAC < 1:3318908/91‑1 CATATGACTTTATTTTTTATCATTTAATGAGGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACAC < 2:1616710/91‑1 ATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACT < 2:1145812/91‑1 ATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACT < 2:2396787/91‑1 ATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACT < 2:2297753/91‑1 ATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACT < 2:1145868/91‑1 ATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAA > 1:2153397/1‑91 ATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAA > 1:2821443/1‑91 TGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAAT < 2:2558239/91‑1 TGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAAT < 2:430235/91‑1 GACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATT < 1:115683/91‑1 GACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATT < 1:2236732/91‑1 ACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTCATTG > 1:1196583/1‑91 ACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTG > 2:896366/1‑91 ACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTG > 1:2395406/1‑91 ACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTG > 1:1196629/1‑91 ACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTG < 1:1500145/91‑1 ACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTG < 2:1933967/91‑1 ACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTG < 2:1934924/91‑1 ACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTG > 1:2391642/1‑91 CTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTGC > 1:2851455/1‑91 TTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTGCT > 1:2747686/1‑91 TTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTGCTG < 1:2069513/91‑1 TTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTGCTG < 2:2462667/91‑1 AGGACAAGAAACCGTTCATCATTAAATGATAAAAAATAAAGTCATATGGTTATCTTATCGAAAGATGATATATTCATCTCTTATAAGTTCAACCATATGACTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/389354‑389251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccatatgactttATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTGCTG > USA300TCH1516_ALE/389318‑389406 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |