| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 389251 = | 206 (1.010) | 10 (0.060) | 8/132 | NT | 6.5% | intergenic (+4/+79) | USA300HOU_RS01780/glpT | hypothetical protein/Glycerol‑3‑phosphate transporter |
| ? | USA300TCH1516_ALE | 389318 = | 120 (0.720) | intergenic (+71/+12) | USA300HOU_RS01780/glpT | hypothetical protein/Glycerol‑3‑phosphate transporter | |||||
Only 100 of 277 total aligned reads displayed.
AGAGTTTATCCTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAAC > USA300TCH1516_ALE/389161‑389341 | agagTTTATCCTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGTATACTAATaaa > 2:263806/1‑91 (MQ=255)agagTTTATCCTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATaaa > 2:1682938/1‑91 (MQ=255) gagTTTATCCTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATaaaa > 1:1047040/1‑91 (MQ=255) gcaattagtgtgtttgcaatgttgagctttatcctcacttggaataaagtaggacaagaaaccgttcatcattaaatgataaaaaatAAAg > 1:2851455‑M1/88‑91 (MQ=255) tttATCCTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGt > 2:835003/1‑91 (MQ=255) tttATCCTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGt > 2:3612085/1‑91 (MQ=255) tttATCCTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGt > 1:2458067/1‑91 (MQ=255) caattagtgtgtttgcaatgttgagctttatcctcacttggaataaagtaggacaagaaaccgttcatcattaaatgataaaaaatAAAGt > 2:896366‑M1/87‑91 (MQ=255) caattagtgtgtttgcaatgttgagctttatcctcacttggaataaagtaggacaagaaaccgttcatcattaaatgataaaaaatAAAGt < 2:1933967‑M1/5‑1 (MQ=255) caattagtgtgtttgcaatgttgagctttatcctcacttggaataaagtaggacaagaaaccgttcatcattaaatgataaaaaatAAAGt > 1:2395406‑M1/87‑91 (MQ=255) caattagtgtgtttgcaatgttgagctttatcctcacttggaataaagtaggacaagaaaccgttcatcattaaatgataaaaaatAAAGt > 1:1196629‑M1/87‑91 (MQ=255) ttATCCTAAGTGGTGTAATCAATTGACTAAAACAGCAGGGCAAACAGCAAAGCGGCAATTTAAATATCTCTAAGACTACCAACAACAAGTc > 2:1516555/1‑91 (MQ=255) ttATCCTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTc > 2:2533705/1‑91 (MQ=255) ttagtgtgtttgcaatgttgagctttatcctcacttggaataaagtaggacaagaaaccgttcatcattaaatgataaaaaatAAAGTCat > 1:2821443‑M1/84‑91 (MQ=255) ttagtgtgtttgcaatgttgagctttatcctcacttggaataaagtaggacaagaaaccgttcatcattaaatgataaaaaatAAAGTCat > 1:2153397‑M1/84‑91 (MQ=255) aTCCTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCat < 2:1590336/91‑1 (MQ=255) aTCCTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCat < 1:1021162/91‑1 (MQ=255) tCCTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCata < 1:640629/91‑1 (MQ=255) ccTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCatat > 2:517674/1‑91 (MQ=255) agtgtgtttgcaatgttgagctttatcctcacttggaataaagtaggacaagaaaccgttcatcattaaatgataaaaaatAAAGTCatat < 2:2396787‑M1/10‑1 (MQ=255) agtgtgtttgcaatgttgagctttatcctcacttggaataaagtaggacaagaaaccgttcatcattaaatgataaaaaatAAAGTCatat < 2:2297753‑M1/10‑1 (MQ=255) agtgtgtttgcaatgttgagctttatcctcacttggaataaagtaggacaagaaaccgttcatcattaaatgataaaaaatAAAGTCatat < 2:1145868‑M1/10‑1 (MQ=255) gtgtgtttgcaatgttgagctttatcctcacttggaataaagtaggacaagaaaccgttcctcattaaatgataaaaaatAAAGTCATATg < 2:1616710‑M1/11‑1 (MQ=255) gtgtgtttgcaatgttgagctttatcctcacttggaacaaagtaggacaagcaaccgttcatcatgaaatgataaaaaatAAAGTCATATg < 1:3682089‑M1/11‑1 (MQ=255) cTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATg < 1:909077/91‑1 (MQ=255) cTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATg < 1:433407/91‑1 (MQ=255) cTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATg > 1:65762/1‑91 (MQ=255) tgtgtttgcaatgttgagctttatcctcacttggaataaagtaggacaagaaaccgttcatcattaaatgataaaaaatAAAGTCATATgg > 2:3639580‑M1/80‑91 (MQ=255) tAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATgg > 1:2024788/1‑91 (MQ=255) tAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATgg > 1:1786934/1‑91 (MQ=255) tAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATgg > 1:1683646/1‑91 (MQ=255) aaGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGt > 1:1309229/1‑91 (MQ=255) ggtgTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGaa > 2:1077455/1‑91 (MQ=255) ggtgTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGaa > 1:3277741/1‑91 (MQ=255) gtgtAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGGATACTAATAAAAAGTCATATGGTTGAAc > 1:803067/1‑91 (MQ=255) gtgtAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAAc < 2:3013722/91‑1 (MQ=255) gtAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACtt > 2:2771750/1‑91 (MQ=255) gtAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACtt > 1:1526532/1‑91 (MQ=255) aTTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAagag < 1:1193299/91‑1 (MQ=255) aTTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAagag < 1:1102376/91‑1 (MQ=255) ttGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAgaga < 1:2041783/91‑1 (MQ=255) ttGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAgaga < 1:750055/91‑1 (MQ=255) tGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGAt > 2:2791749/1‑91 (MQ=255) tGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTCGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGAt > 2:3472535/1‑91 (MQ=255) gAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATg > 1:1454745/1‑91 (MQ=255) aaTAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGa > 2:2297106/1‑91 (MQ=255) aTAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGaa > 2:2549310/1‑91 (MQ=255) aaaCAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAatat > 2:709993/1‑91 (MQ=255) aaaCAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAatat < 2:76509/91‑1 (MQ=255) aaaCAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAatat < 2:1845299/91‑1 (MQ=255) aaaCAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAatat < 2:2093404/91‑1 (MQ=255) aaaCAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAatat > 2:3767691/1‑91 (MQ=255) aaaCAGCAAGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAatat < 2:1785984/91‑1 (MQ=255) aaCAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTTAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAatata > 1:864849/1‑91 (MQ=255) atagcagGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAatatat > 2:2845879/3‑91 (MQ=255) gcagGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATatcat > 1:541114/1‑91 (MQ=255) gcagGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATatcat < 1:2323154/91‑1 (MQ=255) gcagGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAACATatcat > 1:1955754/1‑91 (MQ=255) agGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCt > 2:417784/1‑91 (MQ=255) agGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCt > 1:3866174/1‑91 (MQ=255) gggCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCtt > 1:1238042/1‑91 (MQ=255) ggCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCttt > 2:101816/1‑91 (MQ=255) ggCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCttt > 1:3360932/1‑91 (MQ=255) gCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTc > 2:575728/1‑91 (MQ=255) cAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAACAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCg > 1:3142910/1‑91 (MQ=255) cacaAAAGTGGCAATGTAAATATTTTTTTGTATACTAATAAAAAGTCATATGGTCGAACTTATAAGAGATGAATATATCATCTTTCgataa > 2:381360/1‑91 (MQ=255) cacaAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCgataa > 2:127319/1‑91 (MQ=255) aaaGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCgataagata < 2:1385928/91‑1 (MQ=255) gTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAAcc > 2:3121865/1‑91 (MQ=255) tGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCa > 2:1827935/1‑91 (MQ=255) gCAATGTAAATATTTTTTTTTTTTTTTTTAAAAAGTCATATGGTTGAACTTATAAAAGATGAATATATCATCTTTCGATGAGATAACCatc > 2:2034193/1‑90 (MQ=255) gCAATGTAAATATTTTTTTTATTACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCata > 2:1194205/1‑91 (MQ=255) agaaaccgttcatcattaaatgataaaaaatAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCata < 2:1636076‑M1/60‑1 (MQ=255) aaTGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATCAGAGATGAATATATCATCTTTCGATAAGATAACCatacg > 2:3592742/1‑89 (MQ=255) aaTGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATg > 1:375057/1‑91 (MQ=255) aaTGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATg > 1:3205101/1‑91 (MQ=255) tGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGAc > 1:2416608/1‑91 (MQ=255) gTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACt > 2:269043/1‑91 (MQ=255) cgttcatcattaaatgataaaaaatAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACtt > 1:2237012‑M1/26‑91 (MQ=255) gttcatcattaaatgataaaaaatAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACttt > 1:1619846‑M1/25‑91 (MQ=255) aaaTATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACttt < 2:3873152/91‑1 (MQ=255) aaTATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTa > 1:2417488/1‑91 (MQ=255) aaTATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTa < 2:3360932/91‑1 (MQ=255) tcttcattaaatgataaataatAAAGTCATATGGTTGAACTTATAAGAGATGTTTATATCTTCTTTCGATAAGATAACCATATGACTTTAt > 2:3395209‑M1/23‑91 (MQ=255) atatTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTAt < 1:511226/91‑1 (MQ=255) atTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTAttt < 2:2455901/91‑1 (MQ=255) tttttttGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTAtttt > 2:3908476/1‑91 (MQ=255) ttttttGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTAttttt > 1:1589845/1‑91 (MQ=255) attaaatgataaaaaatAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTAtttttt > 1:262695‑M1/18‑91 (MQ=255) aaaaCTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCAtt < 2:3198216/88‑1 (MQ=255) aaTACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATCAATATATCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCAtt > 2:3248953/1‑91 (MQ=255) aaTACTAATAAAAAGTCATATGGTTGAAATTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCAtt > 1:1174769/1‑91 (MQ=255) aTACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCAttt > 2:1364040/1‑91 (MQ=255) aTACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCAttt > 1:2969582/1‑91 (MQ=255) aCTAATAAAAAGTCATATGGTGGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTaa < 2:3438993/91‑1 (MQ=255) cTAATAAAAAGTCATGTGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAat > 2:1479648/1‑91 (MQ=255) taaAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAatgatg < 2:2922192/91‑1 (MQ=255) aaaaaGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAAtgatga > 2:2784437/1‑91 (MQ=255) aaaaGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGaa < 1:2764774/91‑1 (MQ=255) aaaaGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGaa < 1:2666551/91‑1 (MQ=255) | AGAGTTTATCCTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGTAAATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATATCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAAC > USA300TCH1516_ALE/389161‑389341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |