BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	389251 =	206 (1.010)	10 (0.060)	8/132	NT	6.5%	intergenic (+4/+79)	USA300HOU_RS01780/glpT	hypothetical protein/Glycerol‑3‑phosphate transporter
*	?	USA300TCH1516_ALE	389318 =	120 (0.720)	10 (0.060)	8/132	NT	6.5%	intergenic (+71/+12)	USA300HOU_RS01780/glpT	hypothetical protein/Glycerol‑3‑phosphate transporter

Only 100 of 236 total aligned reads displayed.

AATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTGCTGTT  >  USA300TCH1516_ALE/389228‑389408

aaTATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTa                                                                                            >  1:2417461/1‑91 (MQ=255)

 tcttcattaaatgataaataatAAAGTCATATGGTTGAACTTATAAGAGATGTTTATA‑TCTTCTTTCGATAAGATAACCATATGACTTTAt                                                                                           >  2:3395209‑M1/23‑91 (MQ=255)

  tatTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTAtt                                                                                          <  2:3377983/91‑1 (MQ=255)

   atTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTAttt                                                                                         >  1:1293230/1‑91 (MQ=255)

    tttttttGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTAtttt                                                                                        >  2:3908476/1‑91 (MQ=255)

      attaaatgataaaaaatAAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTAtttttt                                                                                      >  1:262695‑M1/18‑91 (MQ=255)

       ttaaatgataaaaaatAAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTa                                                                                     >  1:581745‑M1/17‑91 (MQ=255)

        taaatgataaaaaatAAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTAt                                                                                    >  1:1916540‑M1/16‑91 (MQ=255)

         ttGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATc                                                                                   >  1:474437/1‑91 (MQ=255)

            aaTACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATCAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCAtt                                                                                >  2:3248953/1‑91 (MQ=255)

             aTACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCAttt                                                                               >  2:1364040/1‑91 (MQ=255)

             aTACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCAttt                                                                               >  1:2969582/1‑91 (MQ=255)

                cTAATAAAAAGTCATGTGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAat                                                                            >  2:1479648/1‑91 (MQ=255)

                  aataaAAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAatga                                                                          >  2:3663872/1‑91 (MQ=255)

                  aataaAAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAatga                                                                          >  2:3593813/1‑91 (MQ=255)

                    taaAAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAatgatg                                                                        >  1:159495/1‑91 (MQ=255)

                     aaaaaGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAAtgatga                                                                       >  2:2784437/1‑91 (MQ=255)

                      aaaaGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGaa                                                                      <  1:2764774/91‑1 (MQ=255)

                      aaaaGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGaa                                                                      <  1:2666551/91‑1 (MQ=255)

                      aaaaGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGaa                                                                      <  2:880177/91‑1 (MQ=255)

                      aaaaGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGaa                                                                      <  2:2533867/91‑1 (MQ=255)

                       AAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAAc                                                                     >  2:10228‑M1/1‑91 (MQ=255)

                       AAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACGTTATTTTTTATCATTTAATGATGAAc                                                                     >  2:2237856‑M1/1‑91 (MQ=255)

                        AAGTCATAAGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACg                                                                    >  2:278644‑M1/1‑91 (MQ=255)

                         aagtcatatggttatcttatcgaaagatgatatattcatctcttataagttcaaccatatgactttATTTTTTATCATTTAATGATGAACg                                                                    >  2:3011838‑M2/67‑91 (MQ=255)

                         aagtcatatggttatcttatcgaaagatgatatattcatctcttataagttcaaccatatgactttATTTTTTATCATTTAATGATGAACg                                                                    >  1:2237012‑M2/67‑91 (MQ=255)

                         aagtcatatggttatcttatcgaaagatgatatagtcatcgcttataagttccaccatatgactctATTTTTCATCACTTAATGATGAACg                                                                    >  2:3157087‑M2/67‑91 (MQ=255)

                         AGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACgg                                                                   >  2:137506‑M1/1‑91 (MQ=255)

                         AGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACgg                                                                   >  2:1592670‑M1/1‑91 (MQ=255)

                          GTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGt                                                                  <  1:2471075‑M1/91‑1 (MQ=255)

                            CATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGttt                                                                <  2:1565126‑M1/91‑1 (MQ=255)

                            CATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGttt                                                                >  2:2201271‑M1/1‑91 (MQ=255)

                              TATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCt                                                              <  2:2484283‑M1/91‑1 (MQ=255)

                              TATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCt                                                              >  2:1189008‑M1/1‑91 (MQ=255)

                              TATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACATTATTTTTTATCATTTAATGATGAACGGTTTCt                                                              <  1:3233389‑M1/91‑1 (MQ=255)

                               tatggttatcttatcgaaagatgatatattcatctcttataagttcaaccatatgactttATTTTTTATCATTTAATGATGAACGGTTTCt                                                              <  2:1636076‑M2/31‑1 (MQ=255)

                               ATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCtt                                                             <  1:1084413‑M1/91‑1 (MQ=255)

                               ATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCtt                                                             >  2:2127388‑M1/1‑91 (MQ=255)

                               ATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCtt                                                             <  2:825240‑M1/91‑1 (MQ=255)

                                TGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTg                                                            <  1:116277‑M1/91‑1 (MQ=255)

                                 GGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGt                                                           <  2:2587726‑M1/91‑1 (MQ=255)

                                  GTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAATATAACCATATGACTGTATTTTTTATCATTTAATGATGAACGGTTTCTTGTc                                                          >  2:3839244‑M1/1‑91 (MQ=255)

                                  GTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTc                                                          >  1:2369034‑M1/1‑91 (MQ=255)

                                  GTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTc                                                          >  2:1505962‑M1/1‑91 (MQ=255)

                                   TTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTcc                                                         >  1:1705732‑M1/1‑91 (MQ=255)

                                       aCTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACt                                                     >  1:2208243/1‑91 (MQ=255)

                                       aCTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACt                                                     <  2:3339659/91‑1 (MQ=255)

                                        cTTATAACAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACtt                                                    <  2:3499395/91‑1 (MQ=255)

                                         ttATAAGAGATGAATATA‑TCATCTGTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGATCGGTTTCTTGTCCTACttt                                                   <  2:3452243/91‑1 (MQ=255)

                                           ataAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTAt                                                 <  2:776847/91‑1 (MQ=255)

                                           ataAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTAt                                                 >  2:125894/1‑91 (MQ=255)

                                           ataAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTAt                                                 >  2:2329251/1‑91 (MQ=255)

                                           ataAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTAt                                                 >  1:3443772/1‑91 (MQ=255)

                                            taAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTAtt                                                <  1:2081489/91‑1 (MQ=255)

                                            taAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTAtt                                                >  1:814665/1‑91 (MQ=255)

                                            taAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTAtt                                                >  1:493318/1‑91 (MQ=255)

                                              agagATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTcc                                              <  1:299025/91‑1 (MQ=255)

                                               gagaTGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCa                                             >  2:1435751/1‑91 (MQ=255)

                                                  aTGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGt                                          <  1:54506/91‑1 (MQ=255)

                                                  aTGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGt                                          >  2:3961281/1‑91 (MQ=255)

                                                  aTGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGt                                          >  1:3834468/1‑91 (MQ=255)

                                                   tGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTg                                         <  1:3250010/91‑1 (MQ=255)

                                                   tGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTg                                         <  1:1485082/91‑1 (MQ=255)

                                                    gAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGCATCTTGTCCTCCTTTATACCAAGTGa                                        >  2:3428981/1‑91 (MQ=255)

                                                      atatatTCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTCCTTTATTCCAAGTGAg                                       >  2:2966787/1‑91 (MQ=255)

                                                      atatatTCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATCAACGGTTTCTTGTCCTACTTTATTCCAAGTGAg                                       >  1:3505592/1‑91 (MQ=255)

                                                      atata‑tCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAgg                                      <  1:1019598/91‑1 (MQ=255)

                                                      atata‑tCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAgg                                      >  2:861823/1‑91 (MQ=255)

                                                        ata‑tCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTTCGGAt                                    >  2:2795881/1‑91 (MQ=255)

                                                        ata‑tCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTATATTGACCTAAATTATTCCAGGTGAGGAt                                    <  2:538680/91‑1 (MQ=255)

                                                         ta‑tCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTTCTTTCTTCCAAGTGAGGTTa                                   >  2:3567586/1‑91 (MQ=255)

                                                         ta‑tCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATa                                   >  2:3238885/1‑91 (MQ=255)

                                                            tcatcTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATaaa                                 >  2:2910610/1‑91 (MQ=255)

                                                              atcTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGc                               <  1:219017/91‑1 (MQ=255)

                                                              atcTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGc                               <  2:1541650/91‑1 (MQ=255)

                                                               tcTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCt                              <  1:864629/91‑1 (MQ=255)

                                                                cTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTc                             <  2:499283/91‑1 (MQ=255)

                                                                cTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTc                             <  1:328470/91‑1 (MQ=255)

                                                                  ttCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCaa                           <  1:1997965/91‑1 (MQ=255)

                                                                   tCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAAc                          <  2:2800227/91‑1 (MQ=255)

                                                                     gataagataaCCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACAt                        >  2:243492/1‑91 (MQ=255)

                                                                     gataagataaCCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACAt                        >  1:1568339/1‑91 (MQ=255)

                                                                     gataagataaCCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACAt                        >  2:1766164/1‑91 (MQ=255)

                                                                       taagataaCCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTg                      >  1:560614/1‑91 (MQ=255)

                                                                          gataaCCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCaa                   >  2:2301631/1‑91 (MQ=255)

                                                                          gataaCCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCaa                   >  2:2753856/1‑91 (MQ=255)

                                                                           ataaCCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCaaa                  <  1:3425183/91‑1 (MQ=255)

                                                                              accatatgactttATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACAGTGCAAacac               >  1:3776853‑M2/14‑91 (MQ=255)

                                                                               ccatatgactttATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAacaca              <  2:1747018‑M2/79‑1 (MQ=255)

                                                                               ccatatgactttATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAacaca              <  1:2991496‑M2/79‑1 (MQ=255)

                                                                                catatgactttATTTTTTATCATTTCATGATGAACGGTTGCTTGTCCTACTTTGTTCCAAGTGAGGATAAAGCTCAACATTGCAAacacac             <  1:3682089‑M2/80‑1 (MQ=255)

                                                                                 atatgactttATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACt            <  2:1145812‑M2/81‑1 (MQ=255)

                                                                                   atgactttATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTaa          >  1:2821443‑M2/9‑91 (MQ=255)

                                                                                    tgactttATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAAt         <  2:430235‑M2/84‑1 (MQ=255)

                                                                                      actttATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTCATTg       >  1:1196583‑M2/6‑91 (MQ=255)

                                                                                      actttATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTg       <  1:1500145‑M2/86‑1 (MQ=255)

                                                                                      actttATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTg       <  2:1934924‑M2/86‑1 (MQ=255)

                                                                                      actttATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTg       >  1:2395406‑M2/6‑91 (MQ=255)

                                                                                         ttATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTGCTg    <  2:2462667‑M2/89‑1 (MQ=255)

                                                                                           aTTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTGCTGtt  >  1:1218313/1‑91 (MQ=255)

AATATTTTTTTGAATACTAATAAAAAGTCATATGGTTGAACTTATAAGAGATGAATATA‑TCATCTTTCGATAAGATAACCATATGACTTTATTTTTTATCATTTAATGATGAACGGTTTCTTGTCCTACTTTATTCCAAGTGAGGATAAAGCTCAACATTGCAAACACACTAATTGCTGTT  >  USA300TCH1516_ALE/389228‑389408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.